Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4312g00001 ATGCTGGGTGACCACTCACCTCTTTTGGGTGGCGGTGGGAACATATCAACACCCAACATGACGGCGGAAGGTGGTGGTGGTGGCGGAGTTGGATCAAATTCTGAAAGTGATATTGAAAGAAGTAGAATTGAAGAAGGTGAACGTAACTTCGGCGGTAACCGGTGGCCGCGACCGGAAACTTTGGCGCTTTTAAGGATACGATCGGACATGGACACAGTTTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTTTTACAGAAGTGCAAAGAAATGCAAAGAGAAATTTGAAAATGTTTATAAGTATCACAAGAGAACTAAAGATGGTAGAGGTGGAAAATCAGATGTCATATCAGCCGCAAAACCAATCAAGATCACCACAAATTTCAGCATCAATGTCAACACCAACACAGACACAGACACCGTCGCAAGTTGTTACAGCTGCGATAACAGAATCAACAACAGTCCCAATGTCATTGCCACCGGTGATCAACACAGCAATGAGTATCCCTCCTCATGTAACTGTTTCATCAATTTCAGTGCCTCAAAATAA 585 0.4393 MLGDHSPLLGGGGNISTPNMTAEGGGGGGVGSNSESDIERSRIEEGERNFGGNRWPRPETLALLRIRSDMDTVFRDASVKGPLWDEVSRKLAELGFYRSAKKCKEKFENVYKYHKRTKDGRGGKSDVISAAKPIKITTNFSINVNTNTDTDTVASCYSCDNRINNSPNVIATGDQHSNEYPSSCNCFINFSASK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4312g00001 194 ProSiteProfiles Myb-like domain profile. 47 111 IPR001005 -
Vifaun4312g00001 194 Pfam Myb/SANT-like DNA-binding domain 53 124 IPR044822 -
Vifaun4312g00001 194 FunFam Trihelix transcription factor GT-2 55 116 - -
Vifaun4312g00001 194 CDD GT1 53 118 - -
Vifaun4312g00001 194 MobiDBLite consensus disorder prediction 1 39 - -
Vifaun4312g00001 194 Gene3D - 55 116 - -
Vifaun4312g00001 194 PANTHER FI21293P1 23 127 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4312g00001 51 126 Trihelix Transcription Factor Family AT1G76890 77.632 8.74e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifaun4312g00001 Myb_DNA-bind_4 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4312g00001 - - psat:127090944 222.246