Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4301g00002 ATGCCAATTTCATATTCATATTCATATTCATATTCATATTCATATTCATATTCACTCTCATCATCATCATCATCATCATTCAAACCAATCCTCTACGGCTGGCTCTGCAGTGCAATCTCCGTCTACTCACTCTCCAACCTCCTCTCGAAATTCTCCGCCATCACCACCGCCACAACCACCGTCGATGTTACACAGGGATTCGCGCTCGGCGGTTTGGTTCTTGTTCGGTTGATTGCCACGTACGCGCAGCACGCGCTTCTTTGGGAAGCTTCTCTTAATGCGGTTTACGATCTTCGCGTTCACGTTTTCGATCGTGTTCTTCAGAGGGAACTTGCTTATTTCGAAGCTAACGACGCCGTTTCGAGTGGGGATGTTGCTTATAGGATTACTGCTGAAGCTTCCGATCTTGCCCAAACCTTATACGCTCTTCTTAATACCATAGTACCTAGTTCTCTACAATTATCTGCAATGATAATGCATATGTTGGCTATAAGTCCTGTCCTTTCTTTGATTTCAGCCATGGTTATTCCTTGTATGGTTCTAGTTGTTGCCTTTCTTGGTCAAGAACTTGGCAAGATATCTAAAAAGTCACATATTAGCGTTGCTGCTCTCTCATCATATCTGAATGAGATTCTGCCCGCGATTCTCTTTGTGAAAGCAAACAATGCAGAGCTGCTTGAGAGCGCCAGGTTTAGGAGACTCGCCCTGATGGACAATTCTGCAAAGCTGAACAAAAAAAGGATGAAAGCACTCATTCCCCAGGTTATACAGGCTATTTACTTTGGAGTTCTTTCCATACTTTGCACAGGTTCGGTGGTTATTTCAAAAGGTTCATTTGATCGCTGTAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATCGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTATTGAACGCCTGTTTGCTATGACCAAGTTCAAAAATAAGGTAGTTGAGAAACCAGATGCGGTTGATTTGGACCATGTTACAGGGGACCTGAAATTTTGTGATGTTTCCTTTAAGTATAATGATAGCTTGCCTTTAATCTTAAATGGGTTGAATCTTCACGTTCGGACAGGAGAAGTAGTTGCTATCGTAGGTCCGTCGGGGGGAGGGAAAACAACACTTGCGAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGTTCTATACTGATTGATAACCAAAACATCCAAGACATTCGTTTGCAGAGTTTGAGAAGACACGTCGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATTGGGATCTGACAACAAAAATTGACTTGGAGAGAGTGAAACGGGTAGCTCAAACTGCTTATGCAGATGAGTTTATTAGAAAACTTCCAGAAGGTTATAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAGAGGCAAAGGTTGGCTATTGCAAGGGCTTTCTATCAAAACTCTTCTGTTTTAATTCTCGACGAGGCAACTTCTGCCTTAGATAGTAAATCTGAGTTATTAGTGAGGCAAGCTGTGGAGCGTTTAATGGAGAATCGCACGGTTCTTGTGATTTCGCATCGCTTGGAAACCGTTATGATGGCGAAACGAATATTCCTTTTAGATAATGAAAAGCTAGAAGAGCTGCCTCGATCAACTATGTTGAATGGTCACATGGATTCATTGATATCATCTGGGCGTATTGTTTGA 1749 0.422 MPISYSYSYSYSYSYSYSLSSSSSSSFKPILYGWLCSAISVYSLSNLLSKFSAITTATTTVDVTQGFALGGLVLVRLIATYAQHALLWEASLNAVYDLRVHVFDRVLQRELAYFEANDAVSSGDVAYRITAEASDLAQTLYALLNTIVPSSLQLSAMIMHMLAISPVLSLISAMVIPCMVLVVAFLGQELGKISKKSHISVAALSSYLNEILPAILFVKANNAELLESARFRRLALMDNSAKLNKKRMKALIPQVIQAIYFGVLSILCTGSVVISKGSFDRCSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTKFKNKVVEKPDAVDLDHVTGDLKFCDVSFKYNDSLPLILNGLNLHVRTGEVVAIVGPSGGGKTTLAKLLLRLYDPISGSILIDNQNIQDIRLQSLRRHVGVVSQDITLFSGTVAENIGYWDLTTKIDLERVKRVAQTAYADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSVLILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNEKLEELPRSTMLNGHMDSLISSGRIV 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4301g00002 582 SMART AAA_5 370 558 IPR003593 GO:0016887
Vifaun4301g00002 582 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524|GO:0016887
Vifaun4301g00002 582 Pfam ABC transporter 361 512 IPR003439 GO:0005524
Vifaun4301g00002 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 561 IPR027417 -
Vifaun4301g00002 582 FunFam ABC transporter related 19 324 - -
Vifaun4301g00002 582 FunFam ABC transporter ATP-binding protein 337 578 - -
Vifaun4301g00002 582 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 35 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifaun4301g00002 582 SUPERFAMILY ABC transporter transmembrane region 37 322 IPR036640 GO:0005524|GO:0016020
Vifaun4301g00002 582 Gene3D ABC transporter type 1, transmembrane domain 14 323 IPR036640 GO:0005524|GO:0016020
Vifaun4301g00002 582 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 581 IPR003439 GO:0005524
Vifaun4301g00002 582 Pfam ABC transporter transmembrane region 66 297 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifaun4301g00002 582 CDD ABC_6TM_exporters 66 318 - -
Vifaun4301g00002 582 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 66 561 IPR039421 -
Vifaun4301g00002 582 Gene3D - 334 579 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4301g00002 334 579 Calmodulin-binding Proteins AT2G36910 44.400 2.51e-54 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4301g00002 K02021 - gmx:100788075 837.025