Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4242g00002 ATGGTTGAACAAGAAATAAGCAGAAAAGGTCCATGGACAGAACAAGAGGATTACAAACTAGCCTATTTCGTTGGGTTATTTGGTGATCGTAGATGGGATTTTATAGCAAAGGTTTCAGGTTTGAGTAGATCAGGTAAAAGTTGCAGGTTACGTTGGGTTAACTATCTTCACCCTGATCTCAAACGTGGCAAGATGACCCCTCTTGAAGAATCTCTTGTTATGGACCTTCACTCTAAATGGGGAAATAGATGGTCTAGAATTGCTAGAAAACTACCGGGAAGAACAGATAATGAGATTAAGAATTATTGGAGGACACACATGAGGAAAAAGAGAGCACAAGAGAAAAAACATGCAGCAACGACAACAACACCTTCGATTTCATCACCTGATCAATCTTCTAGTTGTCAATCTTCACTGTTTTCAAACAACAATCATGCTGTGGATTCACGCGCTTCAAACAAAGAGACCGGAGAAGAAGAGAATTACCAAGTTGAAGAAATTGAACAGAGTTACTCAATGGATGATATATGGAGAGATATTGCTATGTCTGAAGAAGATGACATAAACATTCTTCAACAACCTGTTTATGATGGAACTTGTGATGAGAATTGCAATAACTTTTGTTCTCCTGTAATGCCTTCTGCATTATCATCATCATGGGATTATTCTAATTTAGATCCTTTGTGGGTTATGGATGAAGATGAAAGCAAGATCTTGTTCCCTCCTATTGGTGATCAATGTTTCTCCTTTTATGATCAACAAGGGAACACATTTCTAACTCGTTAA 786 0.3779 MVEQEISRKGPWTEQEDYKLAYFVGLFGDRRWDFIAKVSGLSRSGKSCRLRWVNYLHPDLKRGKMTPLEESLVMDLHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKRAQEKKHAATTTTPSISSPDQSSSCQSSLFSNNNHAVDSRASNKETGEEENYQVEEIEQSYSMDDIWRDIAMSEEDDINILQQPVYDGTCDENCNNFCSPVMPSALSSSWDYSNLDPLWVMDEDESKILFPPIGDQCFSFYDQQGNTFLTR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4242g00002 261 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Vifaun4242g00002 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 56 IPR017930 -
Vifaun4242g00002 261 SMART sant 61 109 IPR001005 -
Vifaun4242g00002 261 SMART sant 8 58 IPR001005 -
Vifaun4242g00002 261 Gene3D - 9 61 - -
Vifaun4242g00002 261 FunFam Myb transcription factor 9 61 - -
Vifaun4242g00002 261 MobiDBLite consensus disorder prediction 106 165 - -
Vifaun4242g00002 261 CDD SANT 64 107 IPR001005 -
Vifaun4242g00002 261 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vifaun4242g00002 261 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vifaun4242g00002 261 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vifaun4242g00002 261 FunFam MYB transcription factor 64 137 - -
Vifaun4242g00002 261 CDD SANT 11 56 IPR001005 -
Vifaun4242g00002 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 168 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vifaun4242g00002 261 Gene3D - 65 110 - -
Vifaun4242g00002 261 MobiDBLite consensus disorder prediction 118 150 - -
Vifaun4242g00002 261 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vifaun4242g00002 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4242g00002 4 255 MYB Transcription Factor Family AT5G59780 54.365 2.38e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifaun4242g00002 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4242g00002 K09422 - gmx:100776886 323.553