Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4226g00003 ATGATTAATGATTCAACCATACAACTCTTTGGGACAACAATTTTCTTCACACACAATATAAATGTCTCTACCATTGATTCTTCCTCAGAATTTGAACCTTCTCTTCCTCATGAAGATTTCTCTAGTCATAGTCTTCATTCATCTTTATCTTTATCTTCATCTTCTCCACTTGAAGTAAATTCTTCAATGGAACATGTTGCAAAGAGATATAAGGAAACATCAAGAAAAGAAGTCACCTCAGTGCAAGTTTTAGAGGATGAGGCTTCATTTCACCCCACAAAGGATTTAAAGTCTCCCACATCTTCAAGTCTTATTGAGAACCCCAAGACTCCCTCATCAGAAACAGAAACTTCTCAACTGAATTCCACTAAAATTGATGAACAGAGTGATATATCACAAGACAAAGGTGCAAACAAACCAGACAAAATTGTTCCATGTCCAAGATGCAAAAGCATGGACACCAAGTTTTGCTACTACAACAACTACAACATCAAACAACCGCGGCACTTTTGCAAGAACTGTCAAAGATATTGGACTTCTGGAGGAACCACTAGAAAGATGCTTGTAGGTGCAGGTCGCCGCAAGAACAAAAGCTCTTCTATTTCTTCTGATGTATCGCATTATCGTCAAATGAGTACTGTCTTTACCTTTGGATCAGATTCTCCTATTATGCCTTCAACTCCACTTGACAAGAAAATGAATATTGATTCACATGAAGAAACAATTGATAAGAGTTATCAGAATTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTGTTATCCTGTGTCATTTTATCCCAATATAGCACACTATGGTGGTTTCTTGCAACCATTATGGAATGTACAATCTATCCCAACACAATCTTGCGGCCCAAGTAAACCTTCATTAGGGAAACATTCAAGAGATGGAGATATGATCATTCATCCCAACTCAGAGAAAGAAAAACTTGGCTTAGAAAGCAACAAGAAAGAAGGTAATAATACTAGTGTATTGATTCCTAAGACACTGATAATTGATGACCCGAATGAAATTGCAAAGAGTTCTGTTTGGTCAACAATAGGAATCAAGAATAGGAGAGGACTTTTCAAGGGATTTGCATCTAAGGGTGATGATAAGAACGATCATGTCGTCGAAGTATCCTCATCATCAGTATTGAAAGCTAACCCTGCAGCTTCATCAAGGTCCCTAATGTTCCATGAGAGGGTTTAA 1212 0.3779 MINDSTIQLFGTTIFFTHNINVSTIDSSSEFEPSLPHEDFSSHSLHSSLSLSSSSPLEVNSSMEHVAKRYKETSRKEVTSVQVLEDEASFHPTKDLKSPTSSSLIENPKTPSSETETSQLNSTKIDEQSDISQDKGANKPDKIVPCPRCKSMDTKFCYYNNYNIKQPRHFCKNCQRYWTSGGTTRKMLVGAGRRKNKSSSISSDVSHYRQMSTVFTFGSDSPIMPSTPLDKKMNIDSHEETIDKSYQNFPPQFPWNPAMCYPVSFYPNIAHYGGFLQPLWNVQSIPTQSCGPSKPSLGKHSRDGDMIIHPNSEKEKLGLESNKKEGNNTSVLIPKTLIIDDPNEIAKSSVWSTIGIKNRRGLFKGFASKGDDKNDHVVEVSSSSVLKANPAASSRSLMFHERV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4226g00003 403 MobiDBLite consensus disorder prediction 27 58 - -
Vifaun4226g00003 403 MobiDBLite consensus disorder prediction 40 58 - -
Vifaun4226g00003 403 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Vifaun4226g00003 403 MobiDBLite consensus disorder prediction 94 127 - -
Vifaun4226g00003 403 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Vifaun4226g00003 403 Pfam Dof domain, zinc finger 141 198 IPR003851 GO:0003677|GO:0006355
Vifaun4226g00003 403 MobiDBLite consensus disorder prediction 83 144 - -
Vifaun4226g00003 403 PANTHER CYCLIC DOF FACTOR 2 4 402 IPR045174 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4226g00003 112 403 C2C2-Dof Transcription Factor Family AT5G62430 42.810 6.05e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifaun4226g00003 zf-Dof 8.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4226g00003 - - psat:127119499 703.745