Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun4003g00003 ATGGGTACCTCGAATCTCTGCTTGTTTTTCTTCTCTCTGGTGAGTTTGTCTGCTATGGCGGCTGCTAAGGTGGTCCTGATTGGGAATAATATCACTCTCTCGTTCGATGATATTGAAGCTAATTTCTCTCCGTCAGTCAAAGGGTCTGGAGAATATGGAGCGTTATTCTTGGCTGAGCCGCTAGATGCATGTACAGAAATTACAAATGAAGCTAAACAATTTCCGAATGCTAGTTCACCTTTTCTTTTGATGATTAGAGGAGGGTGTAGCTTCGAGGACAAAGTTAGGATGGCACAAAAGGCTGGCTACAAAGCTGCAATAGTTTATGACAATGAAGATGGCGGCATCCTAGTTGCAATGGCAGGAAATGCTGCTGGTATAAGAATACATGCGGTATTTATATCAAAAGCTTCGGGTGAAATACTGAAGAAATATGCTGGTTTGACGAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCGTGGTCTATCATGGCGATTTCGTTTATTTCCCTGCTAGCTATGTCTGCAGTGCTGGCTACTTGTTTCTTCGTCCGCAGACATCGCATAAGAAGAGAAAGGCCTCGAACTTCTTCTCATGTTCGTGAGTTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATCTTCACTTCTGCTTTGGAAGATAACTGTACATCTAGAACATGTGCTATCTGCCTTGAAGACTATTGCCCTGGAGAGAAACTCAGGATTCTGCCCTGTTGTCACAAGTTTCATGCTACCTGTGTGGATTCTTGGCTGACTTCATGGAGAACCTTTTGCCCAGTTTGCAAACGAGATGCAAGAACGGGTTTGTCTGACCCACCACCTTCAGAATCCACACCTCTGCTGTTATCAACCCCATCATCTGTGGCGTCCTCTTTCATGTCATCATATGCTTCATCTTCAGCAATACAAATTGCTTCACATTCACAATCTGCTTCACGAAACCACTCTTTTGCTAGTACCCCTTTCATGCCCCCATCTCTAAGGTCCTACCGCCAATCCCCTTCTATTAGCGTCAGCCGTAGCTCTGTAGATCTTCGGAATGCATCCCAAAGATCTCTAGCTTCGCACATGAATTCACCGCGTTCCAATGGTTACCCATCTTTGTCGTCTCTTAACTCAAGATACCTGTCTTCACATGTTCCAAGTCCAAGCAACGGTTCAGTAAGTTACCTTGGTTCATCCAGTCATCAGCAGCATCCACTCCGTTATAGTGAGTCAGCCGCAAGCTTCTCACCATTTGTGTCTGCCAGCTCCCTCCCGGACTGTTAA 1314 0.4498 MGTSNLCLFFFSLVSLSAMAAAKVVLIGNNITLSFDDIEANFSPSVKGSGEYGALFLAEPLDACTEITNEAKQFPNASSPFLLMIRGGCSFEDKVRMAQKAGYKAAIVYDNEDGGILVAMAGNAAGIRIHAVFISKASGEILKKYAGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRTSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCPGEKLRILPCCHKFHATCVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLLSTPSSVASSFMSSYASSSAIQIASHSQSASRNHSFASTPFMPPSLRSYRQSPSISVSRSSVDLRNASQRSLASHMNSPRSNGYPSLSSLNSRYLSSHVPSPSNGSVSYLGSSSHQQHPLRYSESAASFSPFVSASSLPDC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun4003g00003 437 SMART ring_2 235 276 IPR001841 -
Vifaun4003g00003 437 Pfam Ring finger domain 234 277 IPR001841 -
Vifaun4003g00003 437 CDD PA_C_RZF_like 13 163 IPR044744 -
Vifaun4003g00003 437 Gene3D - 19 155 - -
Vifaun4003g00003 437 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 158 292 - -
Vifaun4003g00003 437 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Vifaun4003g00003 437 SUPERFAMILY PA domain 81 144 IPR046450 -
Vifaun4003g00003 437 SUPERFAMILY RING/U-box 224 289 - -
Vifaun4003g00003 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Vifaun4003g00003 437 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 194 282 - -
Vifaun4003g00003 437 MobiDBLite consensus disorder prediction 353 411 - -
Vifaun4003g00003 437 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 156 - -
Vifaun4003g00003 437 Pfam PA domain 81 142 IPR003137 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun4003g00003 21 436 C3H Transcription Factor Family AT1G22670 46.905 5.37e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun4003g00003 K15692 - gmx:100791248 603.594