Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun3940g00001 ATGGAAAACCAATTCTTTTCAAACACTAATCTTCATTATGAACAATCACATCTTACATGGCAATCACTTTCACTTACATCAGAACAACAAAAGAATAATCAAGATTGTTTCTACACACCAACAGATCAATGTGTTCATCAATTTGATTCAGCACTTAGTTCAATGGGATCTTCACCAGCAGCTTCCAATTCCAACATGTCAAATGAAAACTTTGTCATAAGAGAATTGATTGGAAAATTGGGAAACATTGGTAATTGTTCTGATGAGATCTCACACACTTTGGTTGCTGCAAACTCTTACATCAATAGCAATAACAACACTTCATGTTACAACACCCCTTTGAATTCTCCTCCTAAATTGAGCATTCAAAACATGAGTTTGAATTCAACAGTTGCCGAATTCTCAACTGATCCTGGTTTTGCTGAAAGAGCTGCAAAATTCTCTTGCTTTGGAAGTAGGAGTTTTAATGGAAGAACAACACAATTGAGTCAAAGTCAAAGATCTACTCCATTGATGGAAAATGGAAAACTCTCTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAAACTCAATCACAATCTCAAATTGGTACACAAGAGAACATTCATGATCCAATTGAAGTTAACAATTCACAAGAAGAATCAACAATCTCTGAAAATGTTTTGAAACCTTCTCCATATGTGAATTCAAGAAAAAGAAAAGCATCTTCCAAAGGAAAAAACAAAGAAAATTCAACTTCTAGTAACCCTCTAATGGCTTGTGAAGTTGGTGAAGATTCAAATTCAAAGCGCATAAAAACAAGTGAAGGTGAAAAAGTTGAAAATGGTAAAGTAAAAGCAGAGGAAGAGTCAAAAGGGGGTACAAATAGTAATAATGGAGGTGATGAAAAACAGAATAAGAGTAACTCAAAACCACCTGAGGCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAGGCCACTGACAGCCATAGTCTTGCAGAAAGAGTTAGGAGGGAGAAAATAAGCGAAAGAATGAAACTTTTACAAGATCTCGTACCTGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAATTGGCTTCTGTCAACACAAGGGTGGATTTTAGTATTGAAAGCCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCTCTCAAGATTCCTCAGCACCATCCTTTTATGGGCAACAACACCAGCAAAATGCTTTATGCCAAAACCTTGGCATGCACTTATCTTCACTTAATGGATTCCATGAAGCTTCTTCTCAGTATCCATTGACATTCTCTGAAGATGACCTCCACACAATTGTTCAAATGGGATTTGGACAAACTGACAATAGAAAAACACCAATACAATTTCAGAATTTGAACGGGACAAATCAACTACCACTATGA 1491 0.3581 MENQFFSNTNLHYEQSHLTWQSLSLTSEQQKNNQDCFYTPTDQCVHQFDSALSSMGSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISHTLVAANSYINSNNNTSCYNTPLNSPPKLSIQNMSLNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLSQSQRSTPLMENGKLSRVSSSPSLKELGSQTQSQSQIGTQENIHDPIEVNNSQEESTISENVLKPSPYVNSRKRKASSKGKNKENSTSSNPLMACEVGEDSNSKRIKTSEGEKVENGKVKAEEESKGGTNSNNGGDEKQNKSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRVDFSIESLISKDIFQSNNSLAHPIFSQDSSAPSFYGQQHQQNALCQNLGMHLSSLNGFHEASSQYPLTFSEDDLHTIVQMGFGQTDNRKTPIQFQNLNGTNQLPL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun3940g00001 496 CDD bHLH_AtBPE_like 314 399 - -
Vifaun3940g00001 496 Pfam Helix-loop-helix DNA-binding domain 328 375 IPR011598 GO:0046983
Vifaun3940g00001 496 FunFam Basic helix-loop-helix transcription factor 321 393 - -
Vifaun3940g00001 496 Coils Coil 371 391 - -
Vifaun3940g00001 496 MobiDBLite consensus disorder prediction 158 312 - -
Vifaun3940g00001 496 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 202 447 IPR024097 GO:0006355
Vifaun3940g00001 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 393 IPR036638 GO:0046983
Vifaun3940g00001 496 Gene3D - 321 395 IPR036638 GO:0046983
Vifaun3940g00001 496 MobiDBLite consensus disorder prediction 262 287 - -
Vifaun3940g00001 496 MobiDBLite consensus disorder prediction 244 258 - -
Vifaun3940g00001 496 MobiDBLite consensus disorder prediction 288 302 - -
Vifaun3940g00001 496 SMART finulus 330 380 IPR011598 GO:0046983
Vifaun3940g00001 496 MobiDBLite consensus disorder prediction 158 228 - -
Vifaun3940g00001 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 374 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun3940g00001 1 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 46.444 4.23e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifaun3940g00001 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun3940g00001 - - tpra:123889043 767.689