Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun3612g00001 ATGGATAAATTAAACACATCATCAAGTAGCTGGTTATCTGATTTGATGTTGGATGAAATGGAAATGGACGGTTGTGATTTGTTCCAACAAAATTTGTTTGATGATGAAGATTTATTCTCATATGACATAGGAAGTGTTCTTCAACAACAACAGCAACAACAACAACCTTTGTCTCCTGTTTCTTCTCATTCTTCAACCACTTCTCATATTTTGTCTTTTCAGAACACAACCACTACTACTACTACTACTCATTTTCATGCTTTTGATTGTGCCTTAAATACAAAGCAAAACGAGGTTGTTACAGAAGTTCCACAAAATGAAAACGTTGTTGTTAAGAGGTGTTTGGGTCATAATAGTGATAAATATCATATCATAGCAGAGAGAAAGCGAAGAGAGAAACTTAACAAGGGCTTAATTGCTTTAGCTGCTCTTATTCCTGGATTAAAGAAGATGGACAAGGCTTCAGTGGTGGGAGAAGCTATAAAGTACCTGAAAGAACTCCAAGAACGTTTGAAGGTATTAGAACAACATAACAAGAATAGTCTTGTTGTTGAGTCTGTAGTGATGGACAATAAACCGAAGGTAATTCATGAGTCATGGAGTAATGATGGGTCTGAATCTCTCTCCCATGTGGATGCCAGAGTTTTGAACAAAGATGTTCTCATAAGGATTCTCTGCCAAAAGCAAAAGGGTCTTTTGTTCAAATTATTGGACGAGGTTGAAAAGCTTCATCTCTTTGTTGTTACTAGCAATGTTCTACCTTTTGGGGATTCTATAAACATAACCATTGTTGCTAAGATGGAAATGGGGTACAACTTGACATTAAATGATCTTGTAAAACACCTACGTGTTGCTGCATTCAAATTGTCGTAA 873 0.362 MDKLNTSSSSWLSDLMLDEMEMDGCDLFQQNLFDDEDLFSYDIGSVLQQQQQQQQPLSPVSSHSSTTSHILSFQNTTTTTTTTHFHAFDCALNTKQNEVVTEVPQNENVVVKRCLGHNSDKYHIIAERKRREKLNKGLIALAALIPGLKKMDKASVVGEAIKYLKELQERLKVLEQHNKNSLVVESVVMDNKPKVIHESWSNDGSESLSHVDARVLNKDVLIRILCQKQKGLLFKLLDEVEKLHLFVVTSNVLPFGDSINITIVAKMEMGYNLTLNDLVKHLRVAAFKLS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun3612g00001 290 SMART finulus 124 173 IPR011598 GO:0046983
Vifaun3612g00001 290 Coils Coil 157 184 - -
Vifaun3612g00001 290 Pfam Helix-loop-helix DNA-binding domain 123 168 IPR011598 GO:0046983
Vifaun3612g00001 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Vifaun3612g00001 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 179 IPR036638 GO:0046983
Vifaun3612g00001 290 MobiDBLite consensus disorder prediction 50 69 - -
Vifaun3612g00001 290 Gene3D - 117 181 IPR036638 GO:0046983
Vifaun3612g00001 290 PANTHER BHLH TRANSCRIPTION FACTOR 10 288 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun3612g00001 123 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.000 2.80e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifaun3612g00001 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun3612g00001 - - tpra:123910022 255.373