Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun3600g00004 ATGCAAGCTCAACAACCATTACCCACTCATGAAGCTCCCATGATTTCCCACCAGACCGAGACCGGGATAAAGAAAGAAGTTGCATATAGTGGAGTCAGCGAAAAACGTCCAGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGTAGCGGTAGCACGCGTGGGCGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGTGATATCATCACCAAAAGACTTCTTGCGGGCTTTGAGCTTCAAAAGAAAAGAAAATGTAGTAGATGGTGAATCAAGCAGCCTCCTTAATACAGACTTTAAGACAGCTCCCGACAGTACTAGAATGGCCTCGATATCGGAAATTTCATGGTCAAGATGTACTTCTCTTCCTGTTTCACATGCACCTAATCTGTCCCCTTTAATTGCTACACCTGTGTCTGCGAGGACGTATAATGAACAACAGATTAAGCCACATAAAGATGTTAAATCTAAGGTTTCAAGGTCCCTTTCAATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTGTTAACCGCGATGAACAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGCGCCAGTAGAAGTTACTGAGGATGAAGAAATTCCGGAAGAGGAAGCGGTGTGTAGGATATGTCTTGACACGTGCAATGAAGGAAACACCTTTAAAATGGAATGCAGATGTAAAGGTGGTCTAGCTTTGGTGCATGAGGAATGTTTAATCAAATGGTTCAACACAAAAGGAAACAAGAAATGTGATATATGCTTGGAAGAGGTTCAGAATTTACCGGTAACCTTGCTCCGCATGTCCAGCTCTGTTCAACAAAGAAACAGACAGTTGCAGGATCGCCAAAACATAAATTCAGAGACACTAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAACTATTGCTTCCTGATATGAAGACTCAAGCTATCATTTTATCGGCACCGTTTTCCTTTACCTTGGGCCTCCTAGCATCTGTTTTTGCAATCGTCCTTGCGATCAAAGAGTATATATGGACATATGCTGCCCTTGAGTTTGCACTTGTGGCTTTAACTCTGCATCTGTTTTATACTTATTTGCATTTGGCAGCCATTTATTCCATACTACTTTCAACGATTTTGGGTTTTGGAGTTGCTATGGGAATCAACTATTTGTATATCCAGTATGTGACATGGAAATTTCAGGTCTCTACTAATGTTATTCCAGTATGA 1272 0.4088 MQAQQPLPTHEAPMISHQTETGIKKEVAYSGVSEKRPDISLQVPPRPLGFGSGSTRGRVLDHSQSFSKVISSPKDFLRALSFKRKENVVDGESSSLLNTDFKTAPDSTRMASISEISWSRCTSLPVSHAPNLSPLIATPVSARTYNEQQIKPHKDVKSKVSRSLSIPARNVVIVRSVSFVNRDEQEQQDTNDDQITPAPVEVTEDEEIPEEEAVCRICLDTCNEGNTFKMECRCKGGLALVHEECLIKWFNTKGNKKCDICLEEVQNLPVTLLRMSSSVQQRNRQLQDRQNINSETLSAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIILSAPFSFTLGLLASVFAIVLAIKEYIWTYAALEFALVALTLHLFYTYLHLAAIYSILLSTILGFGVAMGINYLYIQYVTWKFQVSTNVIPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun3600g00004 423 CDD RING_CH-C4HC3_MARCH 215 261 - -
Vifaun3600g00004 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Vifaun3600g00004 423 MobiDBLite consensus disorder prediction 1 16 - -
Vifaun3600g00004 423 SUPERFAMILY RING/U-box 211 264 - -
Vifaun3600g00004 423 MobiDBLite consensus disorder prediction 1 23 - -
Vifaun3600g00004 423 MobiDBLite consensus disorder prediction 182 204 - -
Vifaun3600g00004 423 PANTHER OS02G0165000 PROTEIN 54 417 - -
Vifaun3600g00004 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Vifaun3600g00004 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Vifaun3600g00004 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun3600g00004 201 322 C3H Transcription Factor Family AT2G37950 26.515 2.08e-09 55.5