Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun3493g00002 ATGCGTGTTTGTGCGACGGTTATGGCGGCGAAAATGGAGGAAACAACTGCATCGGAATTGAAGGAACGCTTATGGAAAATCGTGAAGAGAATCGTTGACTCCGATGACTATACACTGCAAAACGCCGATGATGCAATCGCGGCGCTCTCTTCTCTCAAGGATTTCAAGTCTCGTTCGAATTCGAATCGAACGAACTCTTTTGATGATAAATTGGACGAATTTGCCCCTCCGACTGAATTTCGGTGCCCTATTTCTACTCAGTTGATGATCGATCCTGTTATCTTGTCCACCGGACAGACTTATGATCGGCCGTTTATCCAGAGGTGGTTGAATGAAGGCAATAGAACATGTCCTCAAACCCAGCAAGTTCTATCTCACACAATTCTTACGCCGAATTTCTTGGTCCGGGACATGATTGCGCAGTGGTGTAAGGAGCGTGGACTTGAGCTACCACAGCCTACTCGTGATACGGATGAAGTTGTGACTGATGCAGACAGAGGCCGTTTAAAAACATTGCTTCATAAGTTGTCATTGTCTGTTTCTGATCAGAAAGCAGCTGCGAAAGAGCTTCGTTTGTTAACAAAGCGAACACCTTCGTTTCGAACACTTTTTAAGGATTCTGGTGATGTGATCACGCAGTTGCTTCGTCCATTATCGCCAGGTGGTGCTTGTCCTCACCCCGATCTTCAAGAGGATTTGATCACAACTGTTCTGAATCTCTCAATTCTTGACGATAATAAGAAAGTTTTTGCAGAGGATCCAACCGTCATTAACCTTCTTATTGATGCCTTGAAATGGGGATCCATTCCAACAAAAAGCAATGCTGCAGCCGCTATTTTCACATTATCAGCTATCGATTCCAACAAGCTCATTATTGGAAAATCTGGAGCTATCAAACATTTGCTTGGCCTTCTAGACGAGGGACATACATTTGCCATGAAAGATGCTGCGTCAGCCATATTTAACCTATGTCTAGTCCACGATAATAAAGAGAGGACCGTGCGAGAAGGGGCGGTTAAGGTCATTTTGAACAAGATCATGAACCACATTCTAGTTGACGAGCTGTTGGCTATACTGGCACTCCTCTCCAGTCATCCCGACGCCGTTGAAGAAATGGTCAATCGCAATGCTGTTCCTTTCTTAATGAAGAATATTCGGGAGAGCACATCAGAAAGATGCAAGGAAAATTGCGTTGCAATTCTATATACAATCTGTTATAGTCGTCGAACAAAGTTGAAGGAAATCAAAGAAGAAGAAAAGGCCAACGGCACACTCTCTATGCTAGCACAATGCGGAACTTCAAGAGCAAAAAGGAAGGCCAACAGTATTCTCGAGAGGCTCAACAGATCTCAATCCTTAACTCACACTGCTTAG 1374 0.441 MRVCATVMAAKMEETTASELKERLWKIVKRIVDSDDYTLQNADDAIAALSSLKDFKSRSNSNRTNSFDDKLDEFAPPTEFRCPISTQLMIDPVILSTGQTYDRPFIQRWLNEGNRTCPQTQQVLSHTILTPNFLVRDMIAQWCKERGLELPQPTRDTDEVVTDADRGRLKTLLHKLSLSVSDQKAAAKELRLLTKRTPSFRTLFKDSGDVITQLLRPLSPGGACPHPDLQEDLITTVLNLSILDDNKKVFAEDPTVINLLIDALKWGSIPTKSNAAAAIFTLSAIDSNKLIIGKSGAIKHLLGLLDEGHTFAMKDAASAIFNLCLVHDNKERTVREGAVKVILNKIMNHILVDELLAILALLSSHPDAVEEMVNRNAVPFLMKNIRESTSERCKENCVAILYTICYSRRTKLKEIKEEEKANGTLSMLAQCGTSRAKRKANSILERLNRSQSLTHTA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun3493g00002 457 Gene3D - 351 455 IPR011989 -
Vifaun3493g00002 457 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Vifaun3493g00002 457 SUPERFAMILY ARM repeat 179 447 IPR016024 -
Vifaun3493g00002 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 149 IPR013083 -
Vifaun3493g00002 457 CDD RING-Ubox_PUB 77 129 IPR045210 -
Vifaun3493g00002 457 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Vifaun3493g00002 457 FunFam RING-type E3 ubiquitin transferase 75 149 - -
Vifaun3493g00002 457 SUPERFAMILY RING/U-box 71 152 - -
Vifaun3493g00002 457 FunFam RING-type E3 ubiquitin transferase 352 453 - -
Vifaun3493g00002 457 PANTHER U BOX DOMAIN-CONTAINING 29 447 - -
Vifaun3493g00002 457 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Vifaun3493g00002 457 Gene3D - 202 350 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun3493g00002 138 457 U-box Gene Family AT3G07360 55.828 9.43e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun3493g00002 - - gmx:100806619 625.55