Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun3381g00001 ATGCCAGCCACTGATATGGCTGTACATACAAGATATCGTCTAATTACGTACTCGCCGGAGATTGTTGATGGGCAGCCTATTTTTGTTTCCTCGAATTGTAGTCCGGCCAAGGCGTTGAAATACGAGCCGGCGGGTCATTCTTTTCATTCTGCTGCACTTAAACTTCTCGGTGTTAAGAAAGAAGAGAATAAGGATGGTGATAGTAAGAAAGTGGTTGATGATAAGGATCAGGCTTATTTGCCGTCGGATTCTTATAGTAGTAAGAGTAAGAAGAAGAAATCCGGTGAAGAGCAGGAGCAGGATCATTATGCGTTGTTGGGTATGAGTCATCTTAGGTATCTTGCTACGGAGGATCAAATTCGGAAAAGCTATCGGGAGACGGCTTTGAGGTTTCATCCGGATAAACAGGCTGTGCTTCTTCTTAATGAGAAGACTGAAGCTGCGAAGCAGGCGAAGAAGGATGAAATAGAAGCTCATTTTAAGGCGATTCAAAAGGCGTATGAGGTGTTGGTTGATCCTGTAAAGAGGAGAATTTATGATTCGACGGATGAGTTTGATGATGAGATTCCTACTGATTGTGCTCCGCAAGACTTCTATAAGGTGTTTGGCCCTGCTTTTATGAGGAATGGGCGGTGGTCTGTTACTCAACCGATTCCGTCGTTTGGTGATGACAAGACTTCGATAAAAGAAGTTGATAATTTCTATAATTTTTGGTACTCCTTTAAAAGCTGGAGGGAGTTTCCACAATCTGATGAGTTTGATCTCGAGCAAGCTGAAACTCGTGATCATAAGAGGTGGATGGAAAGGCAGAATGCGAAACTGTCGGAAAAAGCTAGGAAGGAAGAGTATGCGCGGGTCCGTACTCTTGTTGATAATGCTTACAAGAGGGACCCTAGAATATTGAGAAGGAAAGAAGAGGAGAAAGCTGAGAAGAAAAGGAAAAAGGAGGCCAGGTTCATGGCAAAAAGGTTGGAGGAGGAAGAAGCAGCCAGAGTTGCAGAAGAGGAGAAGCGACGAAAAGCAGAGGAAGATAAAAAAGCTGCTGAAGCTGCTTCTCAACAGAAGAAGGTAAAGGAGAAAGAGAAAAAGCTCTTGCGGAAAGAGAGAACACGCCTTCGTACTCTCTCAGGACCTATTTTGTCACAACACGTGCTTGATATTTCTGAAGATGATGTCGAAAAGATTTGCATGTCATTTGATATCGAACAAATGAGGGGTTTGTGCGAGAAAATGGAAGGCAAAGAGGTGTTAGAGCAAGCAAAAGCTCTAAAAGATGCACTGAGTTGCAAAAAAGATGCAGTTGATGAGAAAAGTAATCAACAAAATGGCTCCGTCAAAGCTAATGGCAGCATTAGTATTCTAGCAGTCAATGTAGAGAAAAAAGAGAAACCTTGGAGCAAAGAAGAGATCGAGCTATTGAGGAAAGGAATTCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAAGTTGTTTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATAATGAAAGCCACTAAAACTGTTCTCCTCCAGAAGCCTGAAACATCCAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGCTGCCACAATTGCATCCCCACTGTCAACCAGAGAAGAATTGGAAGGGGTACCAATATCAACGGTTACATCTGAAAATAGTGCTGCCTCTTCAACACCAACACCAACACCAACACCAAAACCGGTAGCAACGCCTGCAACAACAAACAACAGCAACTCAGAAGATTCTCAAGGAGTTTCAGAACAAGAGGCTTGGTCTGCAGTGCAGGAAAGAGCACTGGTCCAAGCTTTAAAAACCTTTCCGAAGGAAGCTAACCAAAGATGGGAACGAGTAGCTGAAGCTGTACCTGGAAAGACAGTGATTCAGTGCAAGAAAAAATTTGCCTTGATGAAAGAAAATTTCAGGAACAAGAAAGCGGCTGTTTGA 1959 0.4278 MPATDMAVHTRYRLITYSPEIVDGQPIFVSSNCSPAKALKYEPAGHSFHSAALKLLGVKKEENKDGDSKKVVDDKDQAYLPSDSYSSKSKKKKSGEEQEQDHYALLGMSHLRYLATEDQIRKSYRETALRFHPDKQAVLLLNEKTEAAKQAKKDEIEAHFKAIQKAYEVLVDPVKRRIYDSTDEFDDEIPTDCAPQDFYKVFGPAFMRNGRWSVTQPIPSFGDDKTSIKEVDNFYNFWYSFKSWREFPQSDEFDLEQAETRDHKRWMERQNAKLSEKARKEEYARVRTLVDNAYKRDPRILRRKEEEKAEKKRKKEARFMAKRLEEEEAARVAEEEKRRKAEEDKKAAEAASQQKKVKEKEKKLLRKERTRLRTLSGPILSQHVLDISEDDVEKICMSFDIEQMRGLCEKMEGKEVLEQAKALKDALSCKKDAVDEKSNQQNGSVKANGSISILAVNVEKKEKPWSKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPETSKAFDTFLEKRKPAATIASPLSTREELEGVPISTVTSENSAASSTPTPTPTPKPVATPATTNNSNSEDSQGVSEQEAWSAVQERALVQALKTFPKEANQRWERVAEAVPGKTVIQCKKKFALMKENFRNKKAAV 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun3381g00001 652 Gene3D - 588 652 - -
Vifaun3381g00001 652 Gene3D - 458 515 - -
Vifaun3381g00001 652 SUPERFAMILY Chaperone J-domain 77 179 IPR036869 -
Vifaun3381g00001 652 MobiDBLite consensus disorder prediction 61 77 - -
Vifaun3381g00001 652 Gene3D DnaJ domain 84 201 IPR036869 -
Vifaun3381g00001 652 CDD DnaJ 101 172 IPR001623 -
Vifaun3381g00001 652 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 6 651 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vifaun3381g00001 652 CDD SANT 595 642 IPR001005 -
Vifaun3381g00001 652 CDD SANT 464 506 IPR001005 -
Vifaun3381g00001 652 ProSiteProfiles dnaJ domain profile. 101 183 IPR001623 -
Vifaun3381g00001 652 MobiDBLite consensus disorder prediction 536 596 - -
Vifaun3381g00001 652 ProSiteProfiles Myb-like domain profile. 457 512 IPR001005 -
Vifaun3381g00001 652 Coils Coil 307 370 - -
Vifaun3381g00001 652 FunFam Myb family transcription factor 590 650 - -
Vifaun3381g00001 652 ProSiteProfiles Myb-like domain profile. 596 638 IPR001005 -
Vifaun3381g00001 652 MobiDBLite consensus disorder prediction 336 363 - -
Vifaun3381g00001 652 Pfam DnaJ domain 101 180 IPR001623 -
Vifaun3381g00001 652 ProSitePatterns Nt-dnaJ domain signature. 160 179 IPR018253 -
Vifaun3381g00001 652 SMART dnaj_3 100 175 IPR001623 -
Vifaun3381g00001 652 ProSiteProfiles SANT domain profile. 591 646 IPR017884 -
Vifaun3381g00001 652 MobiDBLite consensus disorder prediction 61 99 - -
Vifaun3381g00001 652 SUPERFAMILY Homeodomain-like 458 506 IPR009057 -
Vifaun3381g00001 652 MobiDBLite consensus disorder prediction 547 564 - -
Vifaun3381g00001 652 Pfam Myb-like DNA-binding domain 463 504 IPR001005 -
Vifaun3381g00001 652 MobiDBLite consensus disorder prediction 574 595 - -
Vifaun3381g00001 652 SUPERFAMILY Homeodomain-like 593 640 IPR009057 -
Vifaun3381g00001 652 Coils Coil 417 437 - -
Vifaun3381g00001 652 SMART sant 461 514 IPR001005 -
Vifaun3381g00001 652 SMART sant 592 644 IPR001005 -
Vifaun3381g00001 652 PRINTS DnaJ domain signature 155 175 IPR001623 -
Vifaun3381g00001 652 PRINTS DnaJ domain signature 106 124 IPR001623 -
Vifaun3381g00001 652 PRINTS DnaJ domain signature 124 139 IPR001623 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun3381g00001 102 301 C2H2 Transcription Factor Family AT1G74250 29.289 4.71e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifaun3381g00001 DnaJ 1.9e-16 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun3381g00001 K09522 - gmx:100814414 875.159