LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifaun3313g00001	ATGTATTGGGGTGGAGTCATGGCTGGCCAAATTGGTCAAAGTATCATGGAGGAAGATGTATGGAGAAAAGGACCTTGGACTGCTGAAGAAGATAGGTTGTTAATTGAGTATGTTAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTGTTCGACTTACAGGATTGAAAAGGAATGGAAAGAGTTGTAGATTGAGATGGGTGAATTATCTTAGACCAGATCTTAAAAGGGGTCAAATAACACCACAAGAAGAGAACATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTACCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAGGACTCATTTCAAGAAAAAGGCAAAGAATCCATGGGATGCAGCCAAAAAGGCGAAAAACCGAATCATGAGGAAACAATTATTTCATCAGCAACAACAACTGTTAAATCAGCAGCAGCAGCAACTTCAATTCAACTTGGACATGAAAGGTTTATATAATTTAGTTGCTCCTTATTGTTAG	531	0.3974	MYWGGVMAGQIGQSIMEEDVWRKGPWTAEEDRLLIEYVRLHGEGRWNSVVRLTGLKRNGKSCRLRWVNYLRPDLKRGQITPQEENIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNPWDAAKKAKNRIMRKQLFHQQQQLLNQQQQQLQFNLDMKGLYNLVAPYC	176

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifaun3313g00001	176	Gene3D	-	23	75	-	-
	Vifaun3313g00001	176	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	17	156	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Vifaun3313g00001	176	SMART	sant	22	72	IPR001005	-
	Vifaun3313g00001	176	SMART	sant	75	123	IPR001005	-
	Vifaun3313g00001	176	ProSiteProfiles	Myb-like domain profile.	71	121	IPR001005	-
	Vifaun3313g00001	176	ProSiteProfiles	Myb-like domain profile.	22	70	IPR001005	-
	Vifaun3313g00001	176	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	71	125	IPR017930	-
	Vifaun3313g00001	176	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	22	70	IPR017930	-
	Vifaun3313g00001	176	FunFam	Myb transcription factor	23	75	-	-
	Vifaun3313g00001	176	CDD	SANT	80	121	IPR001005	-
	Vifaun3313g00001	176	SUPERFAMILY	Homeodomain-like	22	117	IPR009057	-
	Vifaun3313g00001	176	Pfam	Myb-like DNA-binding domain	23	70	IPR001005	-
	Vifaun3313g00001	176	Pfam	Myb-like DNA-binding domain	76	120	IPR001005	-
	Vifaun3313g00001	176	FunFam	MYB-related transcription factor	80	124	-	-
	Vifaun3313g00001	176	Gene3D	-	80	124	-	-
	Vifaun3313g00001	176	CDD	SANT	25	70	IPR001005	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifaun3313g00001	16	151	MYB Transcription Factor Family	AT4G13480	80.147	2.15e-78	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vifaun3313g00001		Myb_DNA-binding	1.4e-15	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifaun3313g00001	K09422		-	gmx:100795981	288.5