Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun3016g00001 ATGGCTGATCACCCTTACAGGTCTAATCTTTTCTCTTCTTCATCACCAAGTTTCTTCCAATTCAACCATATTTTCCCATCTTCAAACCCTTCTCCATACCATCACCATCACCCTTTTCTTCATCACCACAGCAACAACCATACCTTTTTCCACTACCATCATATTTCATCTTCTTCTTCACCACCTTCCCCTCCTCTCAGAGAAGAACTACCTCTTTTAAGCCTAATCCCAGCAAAACAAGAAGAATATGAAGATCAACAAGAACATGAGGAAGATATTCAAGACCTTCCTTGCACTGCCATGGATTTAGAAGAAAGAGAAGAAGATGGTAGTAGTAATACTAGTAATACAGTTACTGTTGCACTTCATATAGGTTTGCCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCTTCATCAAATAACTCCTCAGAGATCACTGTCACTGATAAAGAGCACGGTGACGATTCTTCTTCCGGATTCATGATGCTTCATAATAACACCCTTAACAAAGGACAGTATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACACAGTTTGCTTGCCCTGTTTGCTCCAAAACTTTCAACAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCGGAATCTCTAAGAGGCACACAACCAACCGGAATGCTAAGGCTACCATGTTACTGCTGTGCAGCAGGTTGCAGAAACAACATTGATCATCCAAGAGCGAAGCCATTGAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAACACGGGATAAAGCCATTCATGTGTAGAAAATGCAGCAAGGCTTTTGCTGTTAGAGGTGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGTTCTGATTTCAAACACAAGAGGTCTCTGAAGGATCATATCAAAGCCTTTGGAAATGGACATGGTGCTTATGGATTTGATGGGTTTGAAGAAGAAGATGAACCAGCTTCTGAAGTTGAGCAAGATAATGATTAA 1047 0.4069 MADHPYRSNLFSSSSPSFFQFNHIFPSSNPSPYHHHHPFLHHHSNNHTFFHYHHISSSSSPPSPPLREELPLLSLIPAKQEEYEDQQEHEEDIQDLPCTAMDLEEREEDGSSNTSNTVTVALHIGLPNPSAAEMASVLSSSNNSSEITVTDKEHGDDSSSGFMMLHNNTLNKGQYWIPTPSQILIGPTQFACPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHGAYGFDGFEEEDEPASEVEQDND 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun3016g00001 348 MobiDBLite consensus disorder prediction 134 148 - -
Vifaun3016g00001 348 SMART c2h2final6 190 212 IPR013087 -
Vifaun3016g00001 348 SMART c2h2final6 274 294 IPR013087 -
Vifaun3016g00001 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Vifaun3016g00001 348 SUPERFAMILY beta-beta-alpha zinc fingers 186 212 IPR036236 -
Vifaun3016g00001 348 PANTHER ZINC FINGER PROTEIN WIP2 33 345 IPR043584 GO:0003700|GO:0010468
Vifaun3016g00001 348 MobiDBLite consensus disorder prediction 134 159 - -
Vifaun3016g00001 348 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Vifaun3016g00001 348 Pfam Zinc finger, C2H2 type 190 209 IPR013087 -
Vifaun3016g00001 348 SUPERFAMILY beta-beta-alpha zinc fingers 256 294 IPR036236 -
Vifaun3016g00001 348 Gene3D Classic Zinc Finger 189 212 - -
Vifaun3016g00001 348 FunFam zinc finger protein WIP2-like 189 212 - -
Vifaun3016g00001 348 Gene3D Classic Zinc Finger 252 325 - -
Vifaun3016g00001 348 FunFam Zinc finger protein WIP2 243 325 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun3016g00001 66 348 C2H2 Transcription Factor Family AT3G57670 69.551 1.38e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifaun3016g00001 zf-C2H2_6 0.00018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun3016g00001 - - gmx:100802907 490.73