Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun2979g00001 ATGACGATTTCTCTGGACTTGAATGCCTCTCCTGTTCCGGAGGAAGACGAAGAACCTTTTGAGACGCCGGTTGAAGAGTATGATGTGCCAAAAGAAAAGTATGACACGGAAGAAAAACATATAGAGAGTGGAGCTGATATAGCACGCCGGGAACGTGAAGAAAGAAAAAAACGGTTGAAAAGAGAACGTCCAGATGACAGGCCCGTGCAAGTATCACAGCCACCTGGATATGATAATTTTTTCCATAATAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCGGGTTGGTTGGATTGCCCTTCATCTGGTCAGGAAATTTTTGGCATGATACCTTCTAAGGTTCCATTGGGCGAATCCTTCAATGACTATATTTTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTCATTGATTTGACAAATACTTCTCGATACTATTCAGTATCAGATCTAAAGAAAGAGGCTATCAGGCACGTTAAGATCCAATGCAAGGGCCGCGGTGCAGTACCTGATAATTCATCTGTTAATCATTTTGTCTACGAGGTTATACAATTTCTATCACATCAAAAACACTCAAAGAAGTATATACTCGTTCATTGTACACATGGTCATAATCGTACAGGATATATGATAATCCATTATCTAATGCGCACAATGTCAATGTCTATTACTCAGGCGATACAAATGTTTTCTGATGCACGGCCTCCAGGAATATATAAACCTGAGTATATTGATTCATTATATAAATTCTATCATGAAAAAAAGCCTGAAATGATAGTTTGTCCTCCTACTCCTGAGTGGAAGAAGACTCCCGAACTCGTTGATCTCAATGGTGAAGCAGTCCCAGATGACGATGATGATGATGGAGTACCAGATCCTCTGTTGCATGAGAACCATGAGATCGACATGATAATGACAAATGATGATGTTTTGGGAGATGAGATATCTAATGATCAGCAAGATGCATTTCGTCAGTTCTGCTTTCAAATACTCAAATTGGCCAGAGGACGCATGCAATTCCCAGGGTCACACCCAGTTTCTTTAAACAGGGATAATTTACAGCTGTTGCGACAGCGTTATTACTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATTGATGGATGCTACTTGATTGATAGAAACTTCAATTTCCGAAGGGTTCAAATGAGGTTTCCTTGCAGGGTTACAAATGATGGTTTGGCTGAGAAGACTCACCACTTCACATTACTTGACGGGGAGATGATTATTGATACATTGCCTGATTCGAAAAAGCAGGAAAGGAGATACCTTATATATGATCTGATGGCAGTCAACTTTGTTTCCGTGATAGAGCGACCTTTCTGTGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTATCAGGGAAAAATTCCTTACTATAGATATGACATGGAGCCTTTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTGTCTACTGTCACAAAACTTTTGATCGAATTCATTCCAAAACTGTCGCACGATGCAGATGGTCTCATATTTCAGGGATGGGATGATCCTTACGTACCTCGCACTCATGAAGGTCTCTTAAAATGGAAATACGCAGATCTGAGTTCAGTTGATTTTCTCTTTGAGATAGATGATGACCGTCAGCTGCTTTTTCTCCATGAACGTGGTAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGAAGGTTCAGACCCTATGCTTTATTCCGGAAAGATCATCGAGTGTGCTTGGGATGGAGATAAAAATGAATGGATATTCAAGCGAGTCAGAACAGATAAGTCGACTCCCAATGACTTCAATACTTACAAGAAGGTGGTGCGAAGTATAAAAGACAATATCACAGAGGATGTCCTGTTGAATGAAATAAATGAGATAATCCGCCTTCCCATGTATGCCGACAGGATTAGAATTGATAGCAAAGCACATCACCACACTAATACGGCTAGGCGAAGGTAA 2055 0.4019 MTISLDLNASPVPEEDEEPFETPVEEYDVPKEKYDTEEKHIESGADIARREREERKKRLKRERPDDRPVQVSQPPGYDNFFHNKILKSYDRSKLPPGWLDCPSSGQEIFGMIPSKVPLGESFNDYIFPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYSVSDLKKEAIRHVKIQCKGRGAVPDNSSVNHFVYEVIQFLSHQKHSKKYILVHCTHGHNRTGYMIIHYLMRTMSMSITQAIQMFSDARPPGIYKPEYIDSLYKFYHEKKPEMIVCPPTPEWKKTPELVDLNGEAVPDDDDDDGVPDPLLHENHEIDMIMTNDDVLGDEISNDQQDAFRQFCFQILKLARGRMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRNFNFRRVQMRFPCRVTNDGLAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNFVSVIERPFCERWKMLEKEVIEPRNQERYQGKIPYYRYDMEPFRVRRKDFWLLSTVTKLLIEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLSSVDFLFEIDDDRQLLFLHERGKKKLMEGYIVAFEEGSDPMLYSGKIIECAWDGDKNEWIFKRVRTDKSTPNDFNTYKKVVRSIKDNITEDVLLNEINEIIRLPMYADRIRIDSKAHHHTNTARRR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun2979g00001 684 Pfam Dual specificity phosphatase, catalytic domain 146 266 IPR000340 GO:0008138|GO:0016311
Vifaun2979g00001 684 Gene3D Protein tyrosine phosphatase superfamily 75 287 IPR029021 -
Vifaun2979g00001 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 213 223 IPR016130 GO:0016311|GO:0016791
Vifaun2979g00001 684 FunFam mRNA-capping enzyme 576 669 - -
Vifaun2979g00001 684 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 342 555 - -
Vifaun2979g00001 684 Gene3D - 592 661 IPR012340 -
Vifaun2979g00001 684 SMART dsp_5 128 268 IPR020422 GO:0006470|GO:0008138
Vifaun2979g00001 684 SUPERFAMILY Nucleic acid-binding proteins 558 668 IPR012340 -
Vifaun2979g00001 684 Pfam mRNA capping enzyme, catalytic domain 359 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vifaun2979g00001 684 PIRSF mRNA_capping_HCE 80 684 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vifaun2979g00001 684 MobiDBLite consensus disorder prediction 24 68 - -
Vifaun2979g00001 684 CDD Adenylation_mRNA_capping 333 555 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vifaun2979g00001 684 CDD RNA_5'-triphosphatase 97 264 - -
Vifaun2979g00001 684 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 191 260 IPR000387 GO:0016311|GO:0016791
Vifaun2979g00001 684 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 272 IPR020422 GO:0006470|GO:0008138
Vifaun2979g00001 684 FunFam mRNA capping enzyme, putative 321 552 - -
Vifaun2979g00001 684 PANTHER MRNA-CAPPING ENZYME 89 666 - -
Vifaun2979g00001 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 282 IPR029021 -
Vifaun2979g00001 684 MobiDBLite consensus disorder prediction 1 75 - -
Vifaun2979g00001 684 FunFam mRNA capping enzyme family protein 90 305 - -
Vifaun2979g00001 684 Pfam mRNA capping enzyme, C-terminal domain 596 652 IPR013846 -
Vifaun2979g00001 684 Gene3D DNA ligase/mRNA capping enzyme 315 554 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun2979g00001 1 684 Protein tyrosine phosphatase (PTP) family AT3G09100 66.618 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun2979g00001 K13917 - gmx:100803597 1179.85