Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun2827g00001 ATGAAGGAAGGTGAAAAAAGCTTAGATCCACAACTATGGCACGCGTGTGCTGGAGGAATGGTTCAAATGCCATCAGTGAACACTAAAGTTTTCTACTTTCCACAAGGGCATGCAGAACATGCTCAATCCAACGTTGATTTTGGAGATTCTTTCAGAATTCCACCGTTGATGCTATGTCGTGTAGCTTCTGTGAAATTCTTAGCTGACCCAGAAACAGATGAAGTGTTTTCTAAGATAACTTTGATTCCTTTGAGGAATTCAGAGGTTGAAAGCGAAGATTGTGATGGTTTTAATGGTGATGGTTCTGAGAGTTCTGAAAAGCCTGCATCTTTTGCTAAGACTTTGACTCAATCTGATGCAAACAATGGTGGAGGGTTTTCGGTTCCGAGATACTGCGCTGAGACGATTTTTCCTCGGCTCGATTACTCGGCTGAGCCACCGGTTCAGACGGTGATTGCGAAGGATGTTCATGGTGAGGTTTGGAAGTTTAGACATATCTATAGAGGGACACCAAGGAGGCATTTGTTGACAACTGGTTGGAGTAGTTTTGTGAATCAGAAGAAGCTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGGTGAAAATGGTGAACTTTATGTTGGGATTCGTCGCGCAAAGAGAGGTATAGTGAATGGATTGGAAACACCTTCTGGGTGGAGTTCTGGTCTTGGAGTTGGACCTTATGGTGGTGCTTTTTCGGTTTTTTTGAGGGAGGAGAATAACAAGGTGTTGAGAAATGGGATTGGTGATGGGGGTGTTGGTGGTAATTTGGGAGGTGGGAGAGTGAAAGTGAGCGGTGAATCGGTGAAAGAAGCGATGAGACTTGCTGCTAGTAACCAAACATTCGAGGTTGTTTATTATCCGAGAGCGAGTACACCTGAGTTTTGTGTTAAGGTTTCATCTGTTAAAGCTGCTATGAGAATTCAATGGTGTTCTGGTATGAGGTTTAAGATGCCATTTGAAACCGAGGATTCTTCGAGGATTAGTTGGTTTATGGGAACAATTTCGTCTGTTCATGTTGTTGATCCGATTCGTTGGCCTAATTCGCCTTGGAGACTTCTTCAGGTAACTTGGGACGAACCGGATTTGCTACACAATGTGAAGCGAGTAAGTCCGTGGTTGGTTGAATTAGTATCAAGCATGTCAGTGATTCATCTCTCGCCCTTTTCGCCACCGAGAAAGAAACTTCGTTTTCCACAACATCCCGATTTCCCTCTCGATGTTGTTCAGTTTCCAATACCGACGTTTACAGGCAACCCTCTTAATCCGTTGTGTTGTCTATCGTCTTCTTCCGATCAATATAACGCTCCTGCCGCAGGCATTCAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCGTGTTAACAACATCAACAATAATAGAATTCAGTTAGGTGTGTTTCCGAATAACCCTAAGACGATTTCTAATGATAAGAGCAAAGAAAGTTTATCATGTTTGTTGACCATAGGAAACTCTCATAAGAGAAGTTTGGAGATAAATTCTGATAATAATGTTAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATTCTCACCGAGCAACAAATCTCTAGAAAAGCTTCTAGTGATAAAGACAAAGAGAAATGGTTTTTAAGTGATACTTCTCAATCTTCAATTTCCGAACAGTTTTCACCGGGAAAATCTTCTACTACTACGACTAGTACTACCGAGTTTTGTTGGCAACAACTTGGATTAGATACCGGTCATTGTAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGAACCTTAGATTTGTCATGTGTTGGTTCTTATGAAGAACTATACAGAAAACTCGCTAAGATGTTCGGTATAGAAAGATCTGAGATGTTGAGTCGTGTACTCTATCGTGACGCAACAGGTATTGTTAAGCAAACCGGTGAAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTAACAATTCTGATGGATTCAGCTAACAAGGATACTAGAAGGGTTTGTATCACAGGAGCTAGGAATGGTGAATGTGGATTAGATGCATCAAATAAGACTGGACCTATGAGCATATTTGCTTGA 2094 0.415 MKEGEKSLDPQLWHACAGGMVQMPSVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLMLCRVASVKFLADPETDEVFSKITLIPLRNSEVESEDCDGFNGDGSESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENGELYVGIRRAKRGIVNGLETPSGWSSGLGVGPYGGAFSVFLREENNKVLRNGIGDGGVGGNLGGGRVKVSGESVKEAMRLAASNQTFEVVYYPRASTPEFCVKVSSVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFTGNPLNPLCCLSSSSDQYNAPAAGIQGARHAQIGISLSDLRVNNINNNRIQLGVFPNNPKTISNDKSKESLSCLLTIGNSHKRSLEINSDNNVKRHQFLLFGQPILTEQQISRKASSDKDKEKWFLSDTSQSSISEQFSPGKSSTTTTSTTEFCWQQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRKLAKMFGIERSEMLSRVLYRDATGIVKQTGEEPFSDFMKTAKRLTILMDSANKDTRRVCITGARNGECGLDASNKTGPMSIFA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun2827g00001 697 SMART B3_2 111 213 IPR003340 GO:0003677
Vifaun2827g00001 697 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Vifaun2827g00001 697 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifaun2827g00001 697 SUPERFAMILY DNA-binding pseudobarrel domain 104 212 IPR015300 -
Vifaun2827g00001 697 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifaun2827g00001 697 Gene3D - 109 213 IPR015300 -
Vifaun2827g00001 697 ProSiteProfiles PB1 domain profile. 585 665 IPR000270 GO:0005515
Vifaun2827g00001 697 FunFam Auxin response factor 317 390 - -
Vifaun2827g00001 697 FunFam Auxin response factor 109 213 - -
Vifaun2827g00001 697 Gene3D - 316 391 - -
Vifaun2827g00001 697 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Vifaun2827g00001 697 CDD B3_DNA 110 211 IPR003340 GO:0003677
Vifaun2827g00001 697 Gene3D - 584 669 - -
Vifaun2827g00001 697 MobiDBLite consensus disorder prediction 92 111 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun2827g00001 1 667 B3 DNA Binding Superfamily AT4G30080 58.626 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifaun2827g00001 B3 1.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun2827g00001 - - gmx:100778135 987.638