Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun28163g00001 ATGGCGATACAGAAATATTTGTGCGAATATTGCGAAAAGCAATTCCAAGACACACCGTCAGATCGGAAACGGCACGCCGCCGGCACTCAACACAAACAAGCCAAATCACGTTGGTACGATTCCTTCAAACCTCAAAACTACAACCCTATTCCACAGCAACAACCTAATCAACCCTTCTGCTTTCACTTCGTCAACAAGGGTTTTTGTCGTTACGGCGATTCTTGCAAATATTTTCATCCCAATACTCAGCAACAGCAACCGATTACAAGCACGCTGTCAGGGAATGTAGGAGTTTCGTTCGGTAATTTGCCTCCGTCGTTGCAACCTCCGCCTGAAGAGGGGATTGATATACACGTCATTATATCAAAGATGTATAAACAAGCATCCGATTCAGTTTTAACGGTTAGCAAGACTTGCACAAAAGCAAACTTTCGAATGGAATTGAATGAATTGTTGTTCAAAGCTTCTGATCATAAATATCAGTTGAAATTAACTGGTGGCACAATAATTGGTCTTGAAAGATTTGAGAACAATATGGCAACATCTTCTTCAACACTGAATTCTGCATCAGTTGCTTCATGTGCTCAAACGTTCAAACCAACCGCTAGTAAGGACATAGGATGA 624 0.4151 MAIQKYLCEYCEKQFQDTPSDRKRHAAGTQHKQAKSRWYDSFKPQNYNPIPQQQPNQPFCFHFVNKGFCRYGDSCKYFHPNTQQQQPITSTLSGNVGVSFGNLPPSLQPPPEEGIDIHVIISKMYKQASDSVLTVSKTCTKANFRMELNELLFKASDHKYQLKLTGGTIIGLERFENNMATSSSTLNSASVASCAQTFKPTASKDIG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun28163g00001 207 SMART c3hfinal6 54 81 IPR000571 GO:0046872
Vifaun28163g00001 207 Gene3D Classic Zinc Finger 3 49 - -
Vifaun28163g00001 207 SUPERFAMILY beta-beta-alpha zinc fingers 4 52 IPR036236 -
Vifaun28163g00001 207 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Vifaun28163g00001 207 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Vifaun28163g00001 207 Gene3D - 50 103 - -
Vifaun28163g00001 207 SUPERFAMILY CCCH zinc finger 57 83 IPR036855 GO:0046872
Vifaun28163g00001 207 PANTHER NUCLEASE-RELATED 1 118 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun28163g00001 56 93 C3H Transcription Factor Family AT1G04990 47.368 7.59e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifaun28163g00001 zf-U1 4.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun28163g00001 K13152 - gmx:100527203 159.073