Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun2718g00001 ATGCTTCATGAAAGAAAATACACCTATATTCTCATTCTTTTCATGGTAGCCACTTGTTCCCTACCAACCTTAATAGCCGACACAGATGCTCAAATTCTAATGAACTTCAAAAGCTTCTTATCCAATGCAGAAGCTTTAAACAATTGGAGCAATGATTCTACTAATGTATGCACATGGACTGGTTTAATATGCATCAATCAAACTACACTTCATGGTTTGAGACTAGAGAATATGGGTCTAAGTGGAACAATTAATATAGATATTCTTATGAATTTGACCACTTTGAAGAGTTTTAGTGTCATCAACAATAGTTTTGAGGGTCGAATTCCTGCATTCAATAAACTTGTGGGATTAAGGGCATTGTTTCTGACTAATAACAAATTCTCTGGTGAAATACCAAATGATGCTTTTGATGGGTTAAGATGGCTAAAGAGATTGTTCTTAGCAGAAAATGGTTTTAAGGGTCATATACCTATATCACTTGCTAAATTGCCTAGAATTTATGATGTTGATTTACATGGAAATAAATTTGATGAAGGTTTAAGAAATGAGAATCCAAGTGCTTTTGCAGGCAACAAAGGTCTATGTGGAATTCCTTTAAACCGCACCTGCAGCAAAAGCACCGTAAGTGTTCCACATGAAGAAGGAAAAGAAGAAAATAAAAACCGCCATGTCCTTATTAGTGTTATTGTATTCGTGGCAGTGCTTGTATTGGCTTCAATACTAGCACTTTTATTCATCCGTTACCGCCGGAAAAAAACTGCTGCAAAATCCAGTTCGAATATGGAGAATGGACAATCTCAGTCCCAGAACACCAGAACTAGTACAGCTTCTACGAGTGAAGACAAATCCATTGTAGCTGAATCCAAGAAAAGCAAAGATGAAGACTTGAACTTCGTAACGAACGAAAGGGTTGAGTTTGATTTGCAAGATTTGTTGAGGGCTTCAGCTGAGGTTTTGGGAAGTGGGAGTTTTGGATCAACATACAAGGCTATGGTATTGACTGGACCAGTTGTGGTTGTGAAAAGATTTAAGCACATGAACAAAGTTGGTAAGAAAGAGTTCTTTGATCATATGAAAAGGCTTGGAGGGTTGACACATCCTAATCTACTTCCTCTTGTTGCATTCTACTATGGTAAAGAGGAGAAGCTTTTGATACATGATTTTGCAGAAAATGGTAGCTTGGCTAGTCATCTTCACGGTAAACATGTGTGTGATTTGGATTGGCCAACACGGTTGAAGATAATAAAAGGAGTGGCAAGAGGGTTTAGCATATCTTTACAGAGAATTTCCAGACGAAAAGTTACCGCATGGACATCTAAAATCCTCAAACGTTTCAAGTCCCCGGAGGTGAGTCAAAACGAAGGACCGAGCGAGAAGAGTGATGTATGGTGTTTAGGGATACTGATACTAGAGCTATTGACAGGGAAGTTTCCTGCAAATTATTTGAGGCATGGGAAGGGAGCAACTGAGGATTTAGCAATGTGGGTGGAATCTATAGTGAGGGAAGGTTGGAGTGGAGATGTGTTGGATAAAAGCATAGGTGGGAGTAGGGATAAGGAAGGTGAGATGTTGAAGTTGATGAGGATTGGGATGAGTTGTTGTGAATGGAGTTTGGAGAATAGGTTTGGTTGGAGAGAGGCAGTGGCAAAGATTGAGGAGTTGAAGGAAATGGATAGTGTTGAGGTTGGAGTTGAGAGTTTGAACTCTGATTTGTCTATGTGA 1725 0.3913 MLHERKYTYILILFMVATCSLPTLIADTDAQILMNFKSFLSNAEALNNWSNDSTNVCTWTGLICINQTTLHGLRLENMGLSGTINIDILMNLTTLKSFSVINNSFEGRIPAFNKLVGLRALFLTNNKFSGEIPNDAFDGLRWLKRLFLAENGFKGHIPISLAKLPRIYDVDLHGNKFDEGLRNENPSAFAGNKGLCGIPLNRTCSKSTVSVPHEEGKEENKNRHVLISVIVFVAVLVLASILALLFIRYRRKKTAAKSSSNMENGQSQSQNTRTSTASTSEDKSIVAESKKSKDEDLNFVTNERVEFDLQDLLRASAEVLGSGSFGSTYKAMVLTGPVVVVKRFKHMNKVGKKEFFDHMKRLGGLTHPNLLPLVAFYYGKEEKLLIHDFAENGSLASHLHGKHVCDLDWPTRLKIIKGVARGFSISLQRISRRKVTAWTSKILKRFKSPEVSQNEGPSEKSDVWCLGILILELLTGKFPANYLRHGKGATEDLAMWVESIVREGWSGDVLDKSIGGSRDKEGEMLKLMRIGMSCCEWSLENRFGWREAVAKIEELKEMDSVEVGVESLNSDLSM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun2718g00001 574 Gene3D Transferase(Phosphotransferase) domain 1 306 429 - -
Vifaun2718g00001 574 Pfam Protein tyrosine and serine/threonine kinase 318 423 IPR001245 GO:0004672|GO:0006468
Vifaun2718g00001 574 ProSiteProfiles Protein kinase domain profile. 314 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun2718g00001 574 SUPERFAMILY Protein kinase-like (PK-like) 318 555 IPR011009 -
Vifaun2718g00001 574 Gene3D Ribonuclease Inhibitor 25 206 IPR032675 -
Vifaun2718g00001 574 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Vifaun2718g00001 574 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Vifaun2718g00001 574 SUPERFAMILY L domain-like 35 181 - -
Vifaun2718g00001 574 Gene3D Transferase(Phosphotransferase) domain 1 430 568 - -
Vifaun2718g00001 574 MobiDBLite consensus disorder prediction 258 283 - -
Vifaun2718g00001 574 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 182 558 IPR046959 -
Vifaun2718g00001 574 MobiDBLite consensus disorder prediction 257 289 - -
Vifaun2718g00001 574 FunFam pollen receptor-like kinase 1 283 389 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun2718g00001 10 559 Receptor kinase-like Gene Family AT5G35390 38.462 7.19e-135 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifaun2718g00001 PK_Tyr_Ser-Thr 9.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun2718g00001 - - tpra:123914566 862.448