Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun2713g00001 ATGACCACAAAACTTCTATCTTTTCACTTCATTCTCATCATGTTTTTCTCTTCACTTTTAAGTCTCTCTACCATCCAAGTTTATGGCATTTTCACTTTTGCTTCCTTTGCTTTTGCTGCCACTAATGCTACACAACTTCAAGGTAGTGAAGAAACAATTGCACTATTTCATTGGAAAACCAACCTTGACAACCAAAGCCAAGCTTCATTATCTTCTTGGACAACCCTTTCAAGTCCTTGCAATTGGAAAGGAATTGTTTGTAATGAAAAAACCAAATTTGTGACAGATATAAATGTTGCAAGCTTTGGTCTTAAAGGTACTCTTTCAAGTCTCAACTTTTCATCTTTTCCTATGCTTCAAACTTTGGATGTAAGTAACAACTCATTTCATGGAAATATTCCTCATCAAATTGGTAACTTATCCAAAATTTCTAAACTAAAAATGAATAGTAATTTCTTCAATGGTTCCATTCCTTCAATAATTGGAATGTTGATGAATCTTGTTGAACTTGATTTATCAGCTAACTATTTCTCCGGCGAAATCCCTTCATTAAAAAACTTGAAGAACTTAGAAAAACTTGTTCTATACGGAAACTCTCTTTCTGGACCAATTCCTATTGAGTTAGGCACAATCTCTTCTCTTAGAACAATCAAATTGTTAAAGAACAATTTTTCCGGTCAAATTCCGTTTTCCATAGGAAACTTGGTGAATTTAAGGACACTTCAGCTTAGTGAGAACCATTTTCATGGATCAATTCCTTCATCTATTGGAAACTTGACAAAACTCATAAGATTGTCATTTTCAGGTAACCAACTTTCTGGATCAATTCCTTCTTCAATAGGAAACTTGATCAATCTAGAAAGACTTTCTTTTTCACAAAATCATCTTTCTGGTTCTATTCCTTCTACATTTGGAAATTTGACCAAACTAACCTTTCTATTACTTTACAATAACAAACTCAATGGCAGCATTACAGAATCAATGAAAAATATTACCAATTTGCAAAGTTTACAACTAAGTTCAAATGATTTCACTGGCCAATTGCCACATGAAATTTGCCTTGGTGGTTCTTTGAGAAATTTTTCTGCTAATCACAATCGTTTCAGTGGTTTTGTTCCAAGAAGCTTGAAGAATTGCTCAACCCTTCTTAGACTTAACCTTGCGGAAAATATGTTTATTGGAAATATTTCAGATGATTTTGGTGTTTATCCAAATTTGAGCTACATTGATTTGAGTGACAATCAATTTTATGGGGAAATTTCGCCGAATTTGGTGAAAAATCATAAACTAATTGGCCTAATGATCTCGAATAACAATTTATCAGGTACTATACCTCGAGAATTAGGTCAAGCGTCTAGGTTACAATCACTTCATCTCTCTTCAAATCATCTAACAGGAAAAATTCCTAAAGAGCTTTGTAACTTGACTTCATTGTTTCAACTCTCCATGAGTAACAATGAACTTTTTGGAAAGATTCCTACAGAAATAGGATCCATGCAAGGACTTAGCATCTTGAATCTTGCAGCAAATAAACTAAGTGGTTCAATTCCAAAGAAAATTGGTAAGCTTCTCAAATTAGTTCAACTGAATTTGAGCAATAATGAGTTCATGGAAACTATTCCCTTTGAATTTAACAGATTGCAATCTCTTGAAACTCTTGATCTTGGTGGAAATTCGTTAAGCGGAGAAATACCAGAATCACTTGGAGAGTTGCAAAGGTTGAACACATTGAACCTCTCTAACAATGATCTCTATGGACTTGTTCCGTCTAGTTTTGAGTATTTGATAAGCTTGACTATTGTTGACATATCTTATAACCGATTAGAGGGTTCGCTTCCAAACAATCAAGCATTTCTTGACGCGCCGTTTGAATCATTGAGAAACAATAAAGGCTTGTGTGGTAATGCTTCAGGCTTGGATCCTTGCATAAAGGGTAAACACAAAAGTGTGATATTGTCACTATCTGTTACTTTGAGTATTCTGTTTGTTTTTGTCTTCTTGTTTGGTGGTTCTTTGTATATTCATTTGAAAAATGCAAGAAAAATTCAAAAGCAAGCAAAAGAAGAACAAGAACAAAAACAGGCTCAAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTTTACGAAAATATCATTGAAGCAACCGAGGATTTTGATGAGAAATATCTTATTGGTGAAGGTGGTTTTGGTTCGGTTTACAAGGCGAGTTTGCCCTCCGGACAAGTTGTTGCTGTGAAAAAACTCCATGCTGAAATTGACAGAGAGATGCACAATTTCAAGGCTTTTACTAATGAGGTTAAAGTGTTGACACAAATCAAGCATCGTAACATTGTGAAGTTGCATGGATTTTGCTCGCATACGCGCCACTCTTTTGTGGTTTACGAGTTCCTTGAAGGAGGGAGCTTGGATAATGTGTTGAGAAATGATATACAAGTAACAATGTTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGCGTGACAAATGCTCTTTATCATATGCATCACGGTTGTTTTCCGCCTATTGTTCATCGCGACATATCGAGCAAAAATGTTCTTTTAGATTTGGATTATGAAGCTTATATCTCAGACTTTGGAACAGCTAAGATTCTGAATCTTGATTCACACAACTCAACAATATTTGCAGGCACTTATGGTTATGCAGCACCAGAGCTTGCATATACTCGAGTAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTATGTTTGGAAATAATAATGGGAAAGCACCCAGGAGATCTCATTTCTACTTTGTTTTCATCATGTGAAGCACCAATAGCTCATAGTTTGCTTCTGAAAGATGTATTAGACCAAAGACTTCCTCTTCCAGAAAATTCAATTGCTAAGGATGTGATTTTGGTTGCAAAATTGGCGTTTGCTTGCTTGTCTGAAAATCCACGTTCTCGACCAACTATGAAACAAGTGTACAACATGTTTGTGATGCCAAAATTACGATCAATGGAGACATTCCGAATCATCACACTTGGCCAACTTTTAAATTGGTGA 3039 0.3524 MTTKLLSFHFILIMFFSSLLSLSTIQVYGIFTFASFAFAATNATQLQGSEETIALFHWKTNLDNQSQASLSSWTTLSSPCNWKGIVCNEKTKFVTDINVASFGLKGTLSSLNFSSFPMLQTLDVSNNSFHGNIPHQIGNLSKISKLKMNSNFFNGSIPSIIGMLMNLVELDLSANYFSGEIPSLKNLKNLEKLVLYGNSLSGPIPIELGTISSLRTIKLLKNNFSGQIPFSIGNLVNLRTLQLSENHFHGSIPSSIGNLTKLIRLSFSGNQLSGSIPSSIGNLINLERLSFSQNHLSGSIPSTFGNLTKLTFLLLYNNKLNGSITESMKNITNLQSLQLSSNDFTGQLPHEICLGGSLRNFSANHNRFSGFVPRSLKNCSTLLRLNLAENMFIGNISDDFGVYPNLSYIDLSDNQFYGEISPNLVKNHKLIGLMISNNNLSGTIPRELGQASRLQSLHLSSNHLTGKIPKELCNLTSLFQLSMSNNELFGKIPTEIGSMQGLSILNLAANKLSGSIPKKIGKLLKLVQLNLSNNEFMETIPFEFNRLQSLETLDLGGNSLSGEIPESLGELQRLNTLNLSNNDLYGLVPSSFEYLISLTIVDISYNRLEGSLPNNQAFLDAPFESLRNNKGLCGNASGLDPCIKGKHKSVILSLSVTLSILFVFVFLFGGSLYIHLKNARKIQKQAKEEQEQKQAQDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGFGSVYKASLPSGQVVAVKKLHAEIDREMHNFKAFTNEVKVLTQIKHRNIVKLHGFCSHTRHSFVVYEFLEGGSLDNVLRNDIQVTMFDWKKRVNVVKGVTNALYHMHHGCFPPIVHRDISSKNVLLDLDYEAYISDFGTAKILNLDSHNSTIFAGTYGYAAPELAYTRVVNEKCDVFSFGVLCLEIIMGKHPGDLISTLFSSCEAPIAHSLLLKDVLDQRLPLPENSIAKDVILVAKLAFACLSENPRSRPTMKQVYNMFVMPKLRSMETFRIITLGQLLNW 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun2713g00001 1012 Coils Coil 676 696 - -
Vifaun2713g00001 1012 Gene3D Ribonuclease Inhibitor 206 326 IPR032675 -
Vifaun2713g00001 1012 Pfam Leucine rich repeat N-terminal domain 50 88 IPR013210 -
Vifaun2713g00001 1012 Pfam Leucine Rich Repeat 453 475 IPR001611 GO:0005515
Vifaun2713g00001 1012 Pfam Leucine Rich Repeat 574 594 IPR001611 GO:0005515
Vifaun2713g00001 1012 Pfam Leucine Rich Repeat 549 571 IPR001611 GO:0005515
Vifaun2713g00001 1012 Pfam Protein kinase domain 722 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun2713g00001 1012 SMART LRR_typ_2 571 594 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 523 546 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 475 499 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 283 306 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 331 355 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 547 569 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 116 140 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 595 620 IPR003591 -
Vifaun2713g00001 1012 SMART LRR_typ_2 235 259 IPR003591 -
Vifaun2713g00001 1012 FunFam Leucine-rich repeat receptor protein kinase EMS1 237 327 - -
Vifaun2713g00001 1012 ProSitePatterns Protein kinases ATP-binding region signature. 726 749 IPR017441 GO:0005524
Vifaun2713g00001 1012 FunFam Nuclear pore complex protein NUP107 48 206 - -
Vifaun2713g00001 1012 Gene3D Phosphorylase Kinase; domain 1 679 798 - -
Vifaun2713g00001 1012 SUPERFAMILY Protein kinase-like (PK-like) 699 990 IPR011009 -
Vifaun2713g00001 1012 ProSitePatterns Tyrosine protein kinases specific active-site signature. 844 856 IPR008266 GO:0004672|GO:0006468
Vifaun2713g00001 1012 ProSiteProfiles Protein kinase domain profile. 720 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun2713g00001 1012 FunFam Leucine-rich repeat receptor protein kinase MSP1 683 798 - -
Vifaun2713g00001 1012 ProSiteProfiles Leucine-rich repeat profile. 166 188 IPR001611 GO:0005515
Vifaun2713g00001 1012 SMART LRR_sd22_2 547 570 - -
Vifaun2713g00001 1012 SMART LRR_sd22_2 307 333 - -
Vifaun2713g00001 1012 SMART LRR_sd22_2 259 285 - -
Vifaun2713g00001 1012 SMART LRR_sd22_2 164 192 - -
Vifaun2713g00001 1012 Gene3D Ribonuclease Inhibitor 48 205 IPR032675 -
Vifaun2713g00001 1012 Gene3D Transferase(Phosphotransferase) domain 1 799 1000 - -
Vifaun2713g00001 1012 SUPERFAMILY RNI-like 97 419 - -
Vifaun2713g00001 1012 SUPERFAMILY L domain-like 357 615 - -
Vifaun2713g00001 1012 FunFam MDIS1-interacting receptor like kinase 2 799 996 - -
Vifaun2713g00001 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 386 992 - -
Vifaun2713g00001 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 331 646 - -
Vifaun2713g00001 1012 Gene3D Ribonuclease Inhibitor 329 644 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun2713g00001 22 892 Receptor kinase-like Gene Family AT4G08850 41.818 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifaun2713g00001 Pkinase 9.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun2713g00001 - - gmx:100800924 1222.61