Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun2548g00001 ATGAAAGATAAGGGAGTTTTACTTGATGTTGTCACGTACAACTCTTTAATTCGTGGTTGTTGCAGTCTGGATCCCTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGTGCCGGGACAAAAGAATATGTTCATGTCCGTGTACAACAACGTAACGGAAGGAAAAGCTTAACAACTGTTCAAGGGTTAAAGAAAGAGTTCAGCTATAGCAAGATACTCAAGGACTTGAAGAAAGAATTTTGCTGTAATGCTACAAATCCAAAAACATCACTGGATTGTTCCATTGATACTGGATTGTTCGTTACTGGTTCATATGATCATTATGTTAATGTTTGGGACACTAACACCACTCATGTTGTGGTGAATTTTAAAATGCCTGGTAAGTTGGAACTGAGGATGTACAAGTTCGGCTTTGTGAATTGCGATATTGCTTCGGGGGCATTTGCTCATACTTTGTCTGGTCATCGAGATGGTGTAATGACTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGATTACTGGGGGGTGTGATGGCGCCATACGTTTTTGGGACATAAGGCGTGCTGGTTGTTTCCAAGTTTTAAATCAATCTCGTACACAGCTTGGAAGACGTCCACCAATACTCAAACGTTCTTCCATAACTAAGGAATCAAGTACAAAAATGCATGCTGCACAGAAGAAATTTGTCAATGGCAGTGGCAGAAAAATAAGTCTTTTAGAAAAAGGTTTTCTAGCAAAATGCCCATCAATGTTGATTGATGATTATGTAGATCTTCACAAGTCAAAGGAAATGGATGCAACTAAGTCAAACAATGGTGAAAAACCGGGCAGCAGCGTTAACCGTAGCTCTAATCAAAATCAATCAAAAAAAGGAACTCGACAAGAAAGTGTTCAAAATCGGCAAAAGTCAACGAAGAAGATGCAATCACAAATAGAGAAGAAGAAAAAGAAACATCCCAAAGAAAAACTCTTAAAGGCTATTCAATGTATCAATGAAGATGTTGAAAAGGACGATATAAATGATGAAATTCAAGAGGACGACATAAATGATAAAATTCAAGAGGACGACCTAAATGATAAAATTCAAGAGGATGACGTAGATGACGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGGACATCGTAGATGAAGAATTTATGGAGGATGACATATCTAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA 1275 0.3843 MKDKGVLLDVVTYNSLIRGCCSLDPFAEANAEDSGAGAGTKEYVHVRVQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNATNPKTSLDCSIDTGLFVTGSYDHYVNVWDTNTTHVVVNFKMPGKLELRMYKFGFVNCDIASGAFAHTLSGHRDGVMTVEWSASSEWVLITGGCDGAIRFWDIRRAGCFQVLNQSRTQLGRRPPILKRSSITKESSTKMHAAQKKFVNGSGRKISLLEKGFLAKCPSMLIDDYVDLHKSKEMDATKSNNGEKPGSSVNRSSNQNQSKKGTRQESVQNRQKSTKKMQSQIEKKKKKHPKEKLLKAIQCINEDVEKDDINDEIQEDDINDKIQEDDLNDKIQEDDVDDEFQEDDIDLDDEFQEEDIDGEFQEDIVDEEFMEDDISNEFQEDDLDALLLEDKLE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun2548g00001 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 187 - -
Vifaun2548g00001 424 MobiDBLite consensus disorder prediction 271 295 - -
Vifaun2548g00001 424 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Vifaun2548g00001 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 122 IPR001680 GO:0005515
Vifaun2548g00001 424 Pfam WD domain, G-beta repeat 90 113 IPR001680 GO:0005515
Vifaun2548g00001 424 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Vifaun2548g00001 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Vifaun2548g00001 424 Gene3D - 10 93 - -
Vifaun2548g00001 424 ProSiteProfiles Translation initiation factor SUI1 family profile. 44 109 IPR001950 GO:0003743|GO:0006413
Vifaun2548g00001 424 SMART WD40_4 75 113 IPR001680 GO:0005515
Vifaun2548g00001 424 SMART WD40_4 145 185 IPR001680 GO:0005515
Vifaun2548g00001 424 MobiDBLite consensus disorder prediction 266 323 - -
Vifaun2548g00001 424 SUPERFAMILY eIF1-like 23 88 IPR036877 GO:0003743|GO:0006413
Vifaun2548g00001 424 Gene3D - 94 206 IPR015943 GO:0005515
Vifaun2548g00001 424 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 94 128 IPR042238 GO:0006283
Vifaun2548g00001 424 Pfam Translation initiation factor SUI1 41 85 IPR001950 GO:0003743|GO:0006413
Vifaun2548g00001 424 SUPERFAMILY WD40 repeat-like 85 198 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun2548g00001 22 85 Eukaryotic Initiation Factors Gene Family AT1G54290 87.500 3.21e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun2548g00001 K10570 - gmx:100815581 232.646