LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifaun2460g00001	ATGGGTAGAGCTCCATGTTGTGACAAGGCTAATGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACTCTCAAATCCTACATTGAAACAAATGGAACTGGTGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGCGGAAAGAGTTGTAGACTTAGGTGGTTAAATTACTTGAGACCTAATATAAAACATGGTGGATTTACTGAAGAAGAAGACAACATTATTTGCAGCCTTTATATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACTGATAATGATATAAAAAACTATTGGAACACAAGATTGAAGAAGAAATTACTCGGGAAGCGGAAACAATCGACGAATAATAACAACAACTTGATGATGAACCAGAAGGAAACAGATGAGAATTCTTATTCAAATTCATTGAGTAGTTCAGCTCTTGAAAGACTTCAACTTCATATGCAACTTCAAACCCTTCAAAACCCTTTCTCTTTTTACAATAATAACCTTTCTGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGTCTTCAAAACTCGAATAACAACACTATGATGCAATTGCAAAGTGCTTTCCCTTCACCACCGGTTGAATGTTTGGAGAATATTAATATTCCTTTGGAGAATATTAACAATTCAGTTCCCTTCGACGCTTCTGAAAATAATAATAATAATAAGAATCATTATGGTTCGATGGATTCGAGTGTTGCACCGATGAGAGGACAAGGTATTGAGAAGAGTAGTAATGAAGGAATTCAGCAACTGGAAAATGAGCTAGATGAGATTCTCAACAACAGAAATATTATTACTACTACTATGGAAGATGAATTTGATTGTTTCAAAGATATGAATAACAATGGTTCAAAGGATCAAGGCTTGATATGGTGGTCAAATGAATCAGGTGATACTAAATCAGGATCGTCGAACTCGTGGGATTCGTCGACGAATCTTATCCAAGAAGGGATGTTCCAAGATTATGAACTAGGTTATGGTCTGTAA	1047	0.3639	MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSTNNNNNLMMNQKETDENSYSNSLSSSALERLQLHMQLQTLQNPFSFYNNNLSVWPKLHPSQEKMIQISLQNSNNNTMMQLQSAFPSPPVECLENINIPLENINNSVPFDASENNNNNKNHYGSMDSSVAPMRGQGIEKSSNEGIQQLENELDEILNNRNIITTTMEDEFDCFKDMNNNGSKDQGLIWWSNESGDTKSGSSNSWDSSTNLIQEGMFQDYELGYGL	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifaun2460g00001	348	Gene3D	-	7	68	-	-
	Vifaun2460g00001	348	Coils	Coil	261	288	-	-
	Vifaun2460g00001	348	FunFam	Transcription factor MYB36	70	142	-	-
	Vifaun2460g00001	348	SUPERFAMILY	Homeodomain-like	11	109	IPR009057	-
	Vifaun2460g00001	348	MobiDBLite	consensus disorder prediction	122	144	-	-
	Vifaun2460g00001	348	Pfam	Myb-like DNA-binding domain	69	111	IPR001005	-
	Vifaun2460g00001	348	Pfam	Myb-like DNA-binding domain	14	62	IPR001005	-
	Vifaun2460g00001	348	CDD	SANT	71	111	IPR001005	-
	Vifaun2460g00001	348	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Vifaun2460g00001	348	CDD	SANT	16	62	IPR001005	-
	Vifaun2460g00001	348	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	62	IPR017930	-
	Vifaun2460g00001	348	SMART	sant	13	64	IPR001005	-
	Vifaun2460g00001	348	SMART	sant	67	115	IPR001005	-
	Vifaun2460g00001	348	PANTHER	OS09G0431300 PROTEIN	1	296	-	-
	Vifaun2460g00001	348	ProSiteProfiles	Myb-like domain profile.	9	62	IPR001005	-
	Vifaun2460g00001	348	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Vifaun2460g00001	348	Gene3D	-	69	146	-	-
	Vifaun2460g00001	348	FunFam	Transcription factor RAX3	7	68	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifaun2460g00001	1	243	MYB Transcription Factor Family	AT5G57620	63.158	1.71e-98	293

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vifaun2460g00001		Myb_DNA-binding	2.5e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifaun2460g00001	K09422		-	gmx:100783440	419.468