Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun2433g00002 ATGGTTCAGGTTCCGCAGCAGCCACTTCCCATTGATTTAACAGGAACTCAAATGAAGGTAGATGGAAGGAAGTCAATCAAAAAGGAAAAGCCAGTGTTGATATGGCAAGAGAGGGAAAAGGAGCTAGAGATATTTGTTCATATGATAATGTCACAAGCAAAACACATTAACCATAGGGAAAAAGATTATGAGAGTGAAATGTTGAATGAAACTGCTGAGGCCTACTCTGATTTCATTGTACCTTTGCTTAGATTCCAAAAGGAATGGTTGGCTTGGGCTTTCGATCAGGAAAACAATTTCAAAGGTGGAGTGCTTGCAGATGACATGGGAATGGGAAAGACCATTCAAGCAATTGCCCTTGTCCTTGCCAAACGAGAACTCCAACAAAATAGATTTGCATTTTCACAATCGCCCTTGGTCAAAGGAACTCTTGTCATTTGTCCTGTGGTAGCTATCACTCAGTGGGTCGATGAGATTGACCGATGTACTTTGAAAGGAAGCACCAAGGTTCTAGTTTATCATGGGGCAGGTAGAGTTAAGAATCGGAAACAGCTCTCCGAGTATGATTTTGTGATAACTTCATACTCTATTGTTGAATCTGAGAGCAGGAACATGTCGAATTGGCATGAGAGAAATCGTGAAGGACCTAGTGTTGTTAGACAGGAAAAACCATCCAAGCAAGTTAAGAAAAATAAAACAAATGCTATGCCAGCCCTATATGCTGTAAAGTGGCAGCGGATCATACTGGATGAGGCACACTATATAAAAGACAAATGCTCTAATACCACTCAAGCAGTTTTTGCTTTAGAGTCTACCTACAAATGGGCATTAAGTGGCACTCTATTTCAGAACCATCCGGGAGAGTTGTATCCTGTGATAAGGTACCTACAGATAGATCCTTATTCCTATTACTTTTGCGAACACTGTAATTGTAAAGTTCTTCATCACAGGTATGAGTTATGTTCAGACTGCTCCCATGGTTCTGCAGATCATTTCAATTGGTGGAATAAATACATTGCTAAACCAATTGAAAATTCTCGATCCAATGATGTTTGTGGGAAAAAAGCTATGATATTGCTCAATCATAAAATTTTGAAAAACTTGGTACTTAGACGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAAAACTGTTTTAGTGAGAAGGGATTTCCTGGATAGAGACGAGTTCAACTATTATGAAACAATATACAAGGAAGTTCAAGCAAAACTTAATAGATATGTTGGAGAAAATACTACAAGGCTTCCCGGTATTGAAATCCTTGCCCCCATCGCACGGCTGTGTAAGGCAACAAATCATCGATACCTTGTGGAATTTTCTCAAAGTCTGGCATGTAATGCGGCTGACAAAACAAACAAGAAAGTAGCATTTGTCATGAGCCAGAAGAAGATCTTATCCTCGAGAATTTTAAGAAAAATTGGGCTTGAGAACTTTCAGACAAGCACTAAATTAGAGGCTTTGAGAGAAGAAATAAGATTCATGATTGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACACCATTCTTAGATCTTATATACTACTCTTTGTACAAGTCCGGAGTATCTTGCGTTCTGTTGAACGGAAGCATGACACAGGCCGCATGGGATGCTGTTGTTAATAGATTTAATGTTGAACCAGACTGCAGAATTTTGCTCACGACCTTTAGGGCTGGTGGTATTCCACTCAATTTGACAGTAGCATCACATGTATTCATTGTGGACCCTTGTTGCAGTCCAGCTTTAGAGCTTCAGGCTCTAGGCAGAATTCATCGAATTGGGCAATATAAACCTATAAGAGTTGTGAAGTTTGTCATTGCAAACACAGTTGAGGAGAATATTTTGAACGTAACTGAGGGGAATAAACTAGTTGTTCAACGGATTTTAAACGATTCTTCTGAAGCTATGGAGCAATTGTCAACTGGGGGACTTTAA 1974 0.3972 MVQVPQQPLPIDLTGTQMKVDGRKSIKKEKPVLIWQEREKELEIFVHMIMSQAKHINHREKDYESEMLNETAEAYSDFIVPLLRFQKEWLAWAFDQENNFKGGVLADDMGMGKTIQAIALVLAKRELQQNRFAFSQSPLVKGTLVICPVVAITQWVDEIDRCTLKGSTKVLVYHGAGRVKNRKQLSEYDFVITSYSIVESESRNMSNWHERNREGPSVVRQEKPSKQVKKNKTNAMPALYAVKWQRIILDEAHYIKDKCSNTTQAVFALESTYKWALSGTLFQNHPGELYPVIRYLQIDPYSYYFCEHCNCKVLHHRYELCSDCSHGSADHFNWWNKYIAKPIENSRSNDVCGKKAMILLNHKILKNLVLRRTKIGRAADLALPPKTVLVRRDFLDRDEFNYYETIYKEVQAKLNRYVGENTTRLPGIEILAPIARLCKATNHRYLVEFSQSLACNAADKTNKKVAFVMSQKKILSSRILRKIGLENFQTSTKLEALREEIRFMIERDGSAKGIVFSQFTPFLDLIYYSLYKSGVSCVLLNGSMTQAAWDAVVNRFNVEPDCRILLTTFRAGGIPLNLTVASHVFIVDPCCSPALELQALGRIHRIGQYKPIRVVKFVIANTVEENILNVTEGNKLVVQRILNDSSEAMEQLSTGGL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun2433g00002 657 SMART helicmild6 524 607 IPR001650 -
Vifaun2433g00002 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 372 IPR027417 -
Vifaun2433g00002 657 Gene3D - 384 655 IPR027417 -
Vifaun2433g00002 657 SMART ultradead3 78 305 IPR014001 -
Vifaun2433g00002 657 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 653 IPR001650 -
Vifaun2433g00002 657 Pfam SNF2-related domain 93 446 IPR000330 GO:0005524|GO:0140658
Vifaun2433g00002 657 Gene3D - 84 320 IPR038718 -
Vifaun2433g00002 657 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 40 643 - -
Vifaun2433g00002 657 CDD DEXDc_SHPRH-like 82 372 - -
Vifaun2433g00002 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 656 IPR027417 -
Vifaun2433g00002 657 Pfam Helicase conserved C-terminal domain 493 607 IPR001650 -
Vifaun2433g00002 657 CDD SF2_C_SNF 491 618 - -
Vifaun2433g00002 657 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 299 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun2433g00002 27 653 RAD5 or RAD16-like Gene Family AT1G05120 45.906 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifaun2433g00002 SNF2_N 3.9e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun2433g00002 K15083 - gmx:100786366 622.854