Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun2377g00001 ATGTGGCAAAGAAGCATGAAATTGGAGCTTAGACTTGGTCCACCAGGTGAAGAGGAGTGTGTCAATGAAAAAAGTATGAAAATTGTTAAAAAAGAAAGAGATGAACATGAAGATTCATCACTAACTCTTGGTTACTCTTCAAAGAAAGATTCAACTTTTGATTTGTCTAATGCTAAAGGTTCTTCATTTCTTCAACTCTCATCAATGCAAGGGGTTGAAAAGGATGCATCACAATCACAACCTTGTTGCACAAACTTGCAGGATAAAGAGAAGAAAGCATTCTCACCTACTGCAAAAATATCAGATTTTCCTAATAGGTCTCAGAAAAGAAATTCAACTAGTACAGCAGTTGGTTGGCCTCCGATTCGTTCTTTCAGGAAGAACATTGCAAGCGGAAGCTCGTCTAAACCACCTACCGAGCCGCGGCACGTGATTCAAGACAAGGTTGCTGCTAGTAACAAGCCTATTAGAAACTCTAGTAAAGGATTGTTTGTGAAGATCAACATGGATGGAGTTCTTATTGGAAGAAAAGTAGACATCAATGCTTATGACAGCTATGAAAAACTTTCATCAGCTGTAGATGAACTATTCAAAAGTCTCATTCCAGAGATAAATCTATCTCATATTGTCTATTCACACTGCTGTTCTGCTCAAAGAGATTCATCTGATGATGGAACTAACAAGAAGCAAGAGGAAGAAAATAAAGGTATGATGAAAGGTTCATTGATTGGAAGTGGAGAATATAGTCTTGTTTATGAAGATAATGAAGGTGACAAGATGCTTGTAGGGGATGTGCCATGGCACATGTTTGTATCAACAGTTAAGAGACTGAGAGTGTTCAAGAGTTCTGACCTTCCTACTTTTAACATTGGTAGTAAGAAAGACTAG 888 0.3784 MWQRSMKLELRLGPPGEEECVNEKSMKIVKKERDEHEDSSLTLGYSSKKDSTFDLSNAKGSSFLQLSSMQGVEKDASQSQPCCTNLQDKEKKAFSPTAKISDFPNRSQKRNSTSTAVGWPPIRSFRKNIASGSSSKPPTEPRHVIQDKVAASNKPIRNSSKGLFVKINMDGVLIGRKVDINAYDSYEKLSSAVDELFKSLIPEINLSHIVYSHCCSAQRDSSDDGTNKKQEEENKGMMKGSLIGSGEYSLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVFKSSDLPTFNIGSKKD 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun2377g00001 295 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 284 IPR003311 GO:0005634|GO:0006355
Vifaun2377g00001 295 MobiDBLite consensus disorder prediction 87 119 - -
Vifaun2377g00001 295 Pfam AUX/IAA family 8 285 IPR033389 -
Vifaun2377g00001 295 MobiDBLite consensus disorder prediction 30 52 - -
Vifaun2377g00001 295 MobiDBLite consensus disorder prediction 222 236 - -
Vifaun2377g00001 295 MobiDBLite consensus disorder prediction 217 239 - -
Vifaun2377g00001 295 SUPERFAMILY CAD & PB1 domains 156 280 - -
Vifaun2377g00001 295 Gene3D - 157 293 - -
Vifaun2377g00001 295 ProSiteProfiles PB1 domain profile. 162 282 IPR000270 GO:0005515
Vifaun2377g00001 295 MobiDBLite consensus disorder prediction 100 119 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun2377g00001 166 293 B3 DNA Binding Superfamily AT4G23980 26.562 2.34e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifaun2377g00001 AUX_IAA 8.7e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun2377g00001 K14484 - gmx:100793822 281.952