Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun21881g00001 ATGAGGATTATGATTAAGGGAGGTGTTTGGAAAAACACCGAGGATGAAATTCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAGTGGGCTCGAATATCGTCGTTGCTTGTTCGTAAATCTGCAAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAGACTGAATGGACCAGAGAAGAGGATGAGAAGTTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACAATTGCTCCCATTGTTGGGCGTACTCCTTCGCAGTGTTTAGAACGATATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGATAATTATGAACCTGGGGATGATCCTAGGAAATTGCGTCCGGGGGAGATTGATCCGAATCCTGAGTCGAAGCCTGCGCGACCTGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCCGAAGCACGTGCTCGGTTGGCTAACACGAAAGGTAAGAAAGCGAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCTCTGCAGAAGAAAAGAGAATTGAAGGCGGCTGGAATTGATATTAGGCAAAGGAGAAGGAAAAGGAGAGGAATTGACTATAATGCAGAGATTCCGTTTGAGAAGAGGCCTCCTCCGGGTTACTTTGATGTTGCTGATGAGGATAGGCCGGTGGAGCAGCCTGCGTTTCCTACTACCATTGAAGAACTTGAGGGGAAAAGAAGGGTTGATGTGGAGGCGCAGCTGAGAAAACAAGATGTTGCGAGGAATAAAATTGCAGAGAGGCAAGATGCCCCAGCTGCTATTCTTCACGCCAACAAGCTGAATGACCCTGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCTAGTGACCTTATGAGCAGCGAAGAACTCACCGAAGGCAGCAGTGCTACGCGTGCTCTTCTCTCTAATTATCCACAGACACCGAACCAAGCAATGACTCCTTTAAGAACTCCTCAGAGAACACCGGCTAGTAAAAGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTCAGGGAGTCTCAGACACCATTGTTGGGAGGAGAGAACCCAGAGTTGCATCCTTCTGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTTACACTCCAAACCCACTGTTGACTCCCTCTGCAACCCCTGGAAGTACAGGTCTTACTCCAAGAAGTGGTATGACACCGGCAAGGGATGGTTATTCTTTTGGCATGACTCCGAAGGGAACTCCTCTAAGGGATGAGTTACATATCAATGAAGGTATGGAGATGCATGACAGTGCTAAACTCGAGCTACGAAGACAAGCTGATATGAAAAGAAGTTTGCGCTCTGGTTTAAGCGGCCTGCCACAGCCCAAAAACGAGTACCAGATAGTGATGCAACCAGTTCAAGAAGATGCTGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCAGATAGAATGGCTAGAGAGAAGGCGGAAGAAGAGGCACGGCAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTCTAGATCTTATTAGAAACTCCTTGATAAGAGCTGACGGTGACAAGAGTTCATTTGTTCCACCAACCCCAATTGAGCAAGCCGATGAGACGATAAGAAAGGAGCTTCTAACTTTACTGGAGCATGACAATGCCAAGTATCCTCTTGAGGAGATAGCAAATAAGGAGAGAAAGAAAGGAGCCAAACGAGCAGCAAATGGGCCTGCTATCCCTGTCATAGAAGATTTTCAGGAGGATGAGATCAAAGCTGCTGATATGTTGATAAAAGTTGAAGCCCAGTATCTCCGTGCGGCAATGGGGCATGAAAATGACTCCCTTGATGAATTTGTTGAAGCGCATACCACTTGCATTAATGATTTAATGTACTTTTCCACCCGTAATGCCTATGGTCTATCAAGTGTTGCGGGAAATATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAGTAAGTTGGATGATGGTAAGGAGAAAATGATTCGACTTGAGAAGAAGGTTACAGTACTCACACAAGGGTATGAGATGAGATCAAAAAAAAGTCTTTGGCCGCAAATCGAGGCCACTTTCAAGCAGATGAACGTTGCTGCAACAGAATTCGAGTGCTTTCAGGCTTTAAAAAAGCAGGAGCAGTTAGCTGCATCACATAGGATAAACAATCTTTCGTCTGAAGTTCAGAAGCAAAAGGAACTCGAGAGAACTTTACAGAAGAGATATGGAGATCTTATGGCAGAGCTGGAAAGGACACAAAATGTAATGGAGCAATTCAGGGTACAAGCACAGCAGAAGGAAGAAATTGAAGCAAAGAATCACGCAATAGAAGAGGTACAAGCAGAGCAGAAAGAAGAAATTGAAGCAAAGAATCATGCAATAGAAGAGGTACAGGCACAGCAGAAAGAGGAAATTGAAGCAGAGAATCAAGCATTAGAAGAGGTACAAGCACTACAGCAAGAAGAAAGCGAAGCAAAAAATCATGTACTCGAGAGTACTGAAGCTACAGCTGATGAAATTAATGTGGAGGAGGGTACAGAAAATTATGAAGCGGCACCTCCCTCAGCTGACCAGCAAATAGCCACCGTGCAAGATCAGGCTACTTCTAGCTCCAAAATTGACATGGATGTGGATTCTAGTGAAGCACAAATGACGCACAGCACCGTTGTTACATTGCCAGATGCACCCGCCGCAGAAGATGAGAGTGCAGAAGTTGTAGAAGGCAAAAACATTGGAAGTGATATTGATAACAGAGAGATAACAGTTGATATTAGTGCTGCAGTTGAAATAAAAAGTAATGAGGGAAATGGGGAAGGTCAAGATGTTGAGAACCCAGACGAGGTTATGGAAGTTGCAAACCAACCTGATAGTAGCATAAAAGAAACTACACCGCTCGAGGGCATTAGACATTTTAGTGGAATAAGGAATCATAATGAAGATGTTGCTGCTGGTCCAAGGGATTCAAATGGAATTCTTACTCGTCAAATGGAAGAAGAGGAAAACGATTTGGGTTTACAATTTGGAAACATTAGAGGACATGGTGAAACCACAACTTCCTGCAAAACTTGTGATCCAACCTCTAGAATAGTTTCTCAAAGACCACCAAAATCGATTAGCCTTGGATTACCGATAGAACTACTATCTACATTAACCTTTATCACATTTTTTGGGGAGGATGTCAAGACACAAGTTTAG 3336 0.4382 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRPVEQPAFPTTIEELEGKRRVDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLMSSEELTEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKRDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIYTPNPLLTPSATPGSTGLTPRSGMTPARDGYSFGMTPKGTPLRDELHINEGMEMHDSAKLELRRQADMKRSLRSGLSGLPQPKNEYQIVMQPVQEDAEEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRELPRPPPASLDLIRNSLIRADGDKSSFVPPTPIEQADETIRKELLTLLEHDNAKYPLEEIANKERKKGAKRAANGPAIPVIEDFQEDEIKAADMLIKVEAQYLRAAMGHENDSLDEFVEAHTTCINDLMYFSTRNAYGLSSVAGNMEKLAALQNEFENVRSKLDDGKEKMIRLEKKVTVLTQGYEMRSKKSLWPQIEATFKQMNVAATEFECFQALKKQEQLAASHRINNLSSEVQKQKELERTLQKRYGDLMAELERTQNVMEQFRVQAQQKEEIEAKNHAIEEVQAEQKEEIEAKNHAIEEVQAQQKEEIEAENQALEEVQALQQEESEAKNHVLESTEATADEINVEEGTENYEAAPPSADQQIATVQDQATSSSKIDMDVDSSEAQMTHSTVVTLPDAPAAEDESAEVVEGKNIGSDIDNREITVDISAAVEIKSNEGNGEGQDVENPDEVMEVANQPDSSIKETTPLEGIRHFSGIRNHNEDVAAGPRDSNGILTRQMEEEENDLGLQFGNIRGHGETTTSCKTCDPTSRIVSQRPPKSISLGLPIELLSTLTFITFFGEDVKTQV 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun21881g00001 1111 MobiDBLite consensus disorder prediction 498 523 - -
Vifaun21881g00001 1111 CDD SANT_CDC5_II 55 106 IPR047240 -
Vifaun21881g00001 1111 FunFam CDC5 cell division cycle 5-like 5 59 - -
Vifaun21881g00001 1111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Vifaun21881g00001 1111 Gene3D - 5 58 - -
Vifaun21881g00001 1111 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 IPR047242 GO:0000398|GO:0000974
Vifaun21881g00001 1111 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Vifaun21881g00001 1111 MobiDBLite consensus disorder prediction 380 399 - -
Vifaun21881g00001 1111 Coils Coil 167 187 - -
Vifaun21881g00001 1111 SMART sant 58 105 IPR001005 -
Vifaun21881g00001 1111 SMART sant 6 55 IPR001005 -
Vifaun21881g00001 1111 Coils Coil 768 788 - -
Vifaun21881g00001 1111 Coils Coil 796 875 - -
Vifaun21881g00001 1111 MobiDBLite consensus disorder prediction 404 445 - -
Vifaun21881g00001 1111 MobiDBLite consensus disorder prediction 409 426 - -
Vifaun21881g00001 1111 Gene3D - 59 114 - -
Vifaun21881g00001 1111 MobiDBLite consensus disorder prediction 110 150 - -
Vifaun21881g00001 1111 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Vifaun21881g00001 1111 Pfam Myb-like DNA-binding domain 10 70 - -
Vifaun21881g00001 1111 Coils Coil 689 716 - -
Vifaun21881g00001 1111 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Vifaun21881g00001 1111 CDD SANT 10 53 IPR001005 -
Vifaun21881g00001 1111 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Vifaun21881g00001 1111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Vifaun21881g00001 1111 FunFam CDC5 cell division cycle 5-like 60 120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun21881g00001 1 833 MYB-Related Transcription Factor Family AT1G09770 75.000 0.0 1234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifaun21881g00001 Myb_Cef 9.1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun21881g00001 K12860 - gmx:100790369 1432.93