Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun20878g00001 ATGAATATGGAAAATCACAATGATTCTTCTGAGTGGCAGAACTTGAACTCAAATTCTTGGTCTCAATACAGTGATCATTCACACTTTGCTGCACAAATTCTACCTCAAAATATCTCTGATTCTTCTTCTGCTTCTTTTCAATATAGTGAGTTTCAGTCATGGTCTTTACCTATTGAAGGGAGTTTAGAAGATAGAGCAGTAAGTGCTTCCAAGAGTCATAGCCAAGCAGAGAAAAGACGCAGAGATAGAATCAATACTCAGCTTGCTAATCTCAGAAAACTCATTCCTATGTCTGATAAGATGGACAAAGCAGCTTTACTAGGGAGTGTAATAGATCATGTCAAAGACCTAAAGAGAAAAGCAATGGATGTTAGCAGAGTCATCACAGTTCCAACTGAAATCGATGAAGTATCAGTAGACTACAACCATGTTATTGAAGACGAAACCAGCACTAACAAAGTGGACAAATTCAAGAAAAATATCATCATCAAGGCTTCTGTTTGCTGCGACGATCGACCTGAACTGTTCTCTGAACTAATCCAAGTCCTCAAAGGGTTAAGACTTACAACAGTTAAAGCAGACATAGCAAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTATGTTCTAAGGACAGTGAAGATAATGTTTGCGTTAACACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAAAGGTTCTTTTTGCCTTCACATTTCGTATAG 777 0.381 MNMENHNDSSEWQNLNSNSWSQYSDHSHFAAQILPQNISDSSSASFQYSEFQSWSLPIEGSLEDRAVSASKSHSQAEKRRRDRINTQLANLRKLIPMSDKMDKAALLGSVIDHVKDLKRKAMDVSRVITVPTEIDEVSVDYNHVIEDETSTNKVDKFKKNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEDNVCVNTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun20878g00001 258 CDD ACT_UUR-ACR-like 166 201 - -
Vifaun20878g00001 258 SMART finulus 74 123 IPR011598 GO:0046983
Vifaun20878g00001 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 121 IPR036638 GO:0046983
Vifaun20878g00001 258 CDD bHLH_AtAIG1_like 63 140 - -
Vifaun20878g00001 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Vifaun20878g00001 258 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983
Vifaun20878g00001 258 Gene3D - 63 125 IPR036638 GO:0046983
Vifaun20878g00001 258 PANTHER TRANSCRIPTION FACTOR BHLH30 22 254 IPR045847 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun20878g00001 3 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.238 4.20e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifaun20878g00001 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun20878g00001 - - gmx:100799687 367.081