Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun20431g00004 ATGGCACCTCCAAGGAAGTCTAGAAGTGTGAATAAGCGGTTTACAAATACAAATGATCTTTCTCCTGAGAAAGATGGAGTTGGCTCAAGTAAAAACAAGCACAGGAAGAAGAAACTGTCTAATAAATTGGGATCTCAGTGGAGTAAGCAGGAACTTGAGCGATTCTATGAAGCATACAGAAAATATGGGAAAGATTGGAAGAAGGTGGCTGCTGCTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGGACGGCTTCTGTTGTGGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAAGGAGAGCAATGATGCACCAGGATCTCGGAAACCTGTGAAACGAAAGCGTGAAAAAATTCAGTTTAGTGTTTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTATCCAGCCTCGTGCAGTTGGGAAGAGGACACCCCGAGTTCCAGTCTACCACTCTTACAAAGATGATAGGGAAAATTATGTTTCACCTAATAAAAGAAGTTTGAAGTCCACTGCTGATGCTAATGATGACGAAGCTGCACATGTAGCTTTGACATTAACCAGGGCTTCACAAAGAGGAGACTCTCCCCTTTCTCAAACACCACATAGGAGAGCAGGGCAGAAGTCCTCTCTTGTTCAGAGCCGGGAAAGAAAGCAAATATCAGAAAAGACTCGTGCCAAGTTACACAATGTTCCTGTGGGTGAAGATTTTGTGGAAGGTAGTCTAGAAAGCAGAGGAGCTGAAAATGGAGAATATGCTAGAGATACTAGTTCCTTGATAGATATGGAAGGAACGAGCACCGCTGGAGTTCTTCTAAAGAAAGGAAAATTTTATAGAAAAAAAGAGAAATTGGAAAATATTGGAAATGATCAGCTTGATGATGGAGGAGAAGCATGCAGTGGTACTGAAGAAGGACTTAGTGTTAGGTCTTTGAAGGAAAATAATATGGAGGGTACTAATGAAAGGCTTGAGCAATTCTCTCCAACAAGTCAGCGGAAAAAAAGCCAAAACCTCTTTTTTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGACATCTAAAGTAGAATCTGATTCACCTGTCCAGTTGAAGGGAGAAAGAATGACTGTTGTTAAAGATGACAAGTCTGCTTTACCTGAAGCAACTTCAACAAGTCATAAGAGAAATAAAGTTAGACTCCGCGGGGTCTCTGTAGCCGACACTTCAACGTCCAAAAAAGCTAAACTCGGAAAAGATATAGCAAATGATACCAGTGCTCTTTCTGAATCAAAAGAGCAGCTTCCGTTTGCTGATAAAACATGGAAAAGAAAGCACAAGTCCACTGTTTCAAAGGCTGTGGATGATGGGAACAAACCTGCAATTAAAGGAAAACAAACTGATCATGTTATTGCCTCACCAAAACAATTGAAGATGGTCAAACCATCAGAGGTTGTCTTGCGTGGTGATCAGAAAGTCTTAGCAATATCAACCGCTGAAATTCCACTTTTGAGTGAAATTAGTTCTCCAACCAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCTAAAGAGAAGTCTTCTGAGAATATATTGAAAAACAAACCTAATAACTACTCTACCCAAAAGGAAAAGCTTTCCAGTTGCTTGTCATCTTCTTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTGGGGCTGGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGTAAACCACGCAGGTTTTCTGAACATTTTTTACACGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAGCATTATTCTGAGCTGCGGACTGGTGTCAGAGACGGACTTCCGACAGATTTAGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACTGTTGACCATGACAAGTGCAGAATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTATAACTAAAGAACCACAGATTAATGGAAATTCAAGTTTTGGGGGATGTGAAATGCATTCCTCACCTGTAAAGGTACACTCCTCTTCAAGTGCTTCAGTAAAGCAAGGAAAGGTGGATGCTAACCATGCCACTTCCCAGACCAATATTGATAACCTCTGTGCTCAAGCTGCTTGTGCTCAACCGTCTCAAGTGATGCAACATGAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAGAAGGAGACAGTGCTAATAGAACTTCGAAATGCAAATAATGGCATATTGGAAAATCAAAACGGCATAGAATGTTTAAAAGATCCCGAAGGTTTCAAGAAGCACTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACCATGCTTCAATTAAGGCAACGCAACACCTACATGGACAACTCTTTCCCACCATGGATGAAGCCCAAAGCAGATTTTGAAGTTAATGATGATCTTCCTAGTGTGTTGGATAATTCTATGACACAAGAGTCTAGGTCAACTGTCATTGAAATTGTTAAAAGATCCAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCTACAAAGGAAGGTAAAGATGCTATTACGAGGATTGGACAGGCATTGGATTCTATTGATTATCAGCAATTGTCCTCTAAGTACAGGTTGCCTGTGATAAGGTCCCAAGATCAAGTGAATGGCAGTTTTTATCAGCATAATCAATCGACTTGCAAAGCATCCGAGCCTTTACTTAATGATGCATCTGGTCCAAAATTGCATAAAGATTCTGATGAAGTTGATTTTGAAATACCGTCAGAGCTCATCACTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACAGAACGACAATACCCTCCAGCAGATGTGGCTCGGATATTAGATTCTGCTGTTACCAGCTTGCAACCGTGCGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3378 0.4127 MAPPRKSRSVNKRFTNTNDLSPEKDGVGSSKNKHRKKKLSNKLGSQWSKQELERFYEAYRKYGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEKESNDAPGSRKPVKRKREKIQFSVSKDPVQSQSVTSSDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKDDRENYVSPNKRSLKSTADANDDEAAHVALTLTRASQRGDSPLSQTPHRRAGQKSSLVQSRERKQISEKTRAKLHNVPVGEDFVEGSLESRGAENGEYARDTSSLIDMEGTSTAGVLLKKGKFYRKKEKLENIGNDQLDDGGEACSGTEEGLSVRSLKENNMEGTNERLEQFSPTSQRKKSQNLFFGDEIHALNALQTLADLSLMMPTSKVESDSPVQLKGERMTVVKDDKSALPEATSTSHKRNKVRLRGVSVADTSTSKKAKLGKDIANDTSALSESKEQLPFADKTWKRKHKSTVSKAVDDGNKPAIKGKQTDHVIASPKQLKMVKPSEVVLRGDQKVLAISTAEIPLLSEISSPTKQRSRRKMIFQRPSMPKEKSSENILKNKPNNYSTQKEKLSSCLSSSLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRTGVRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNPLDNMPEALRRQIGARKASFITKEPQINGNSSFGGCEMHSSPVKVHSSSSASVKQGKVDANHATSQTNIDNLCAQAACAQPSQVMQHEAKEADIHALSELKRALDKKETVLIELRNANNGILENQNGIECLKDPEGFKKHYATVLVELKEASGQVSDTMLQLRQRNTYMDNSFPPWMKPKADFEVNDDLPSVLDNSMTQESRSTVIEIVKRSRLRAHAMLDAAFQAWSQATKEGKDAITRIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYQHNQSTCKASEPLLNDASGPKLHKDSDEVDFEIPSELITSCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDPRNLPIYREIQMCMGRIKTQILALIPT 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun20431g00004 1125 Coils Coil 660 680 - -
Vifaun20431g00004 1125 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 564 583 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 9 25 - -
Vifaun20431g00004 1125 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 116 158 - -
Vifaun20431g00004 1125 Pfam DIRP 607 708 IPR033471 -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 1 44 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 116 144 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 345 369 - -
Vifaun20431g00004 1125 Gene3D - 5 99 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 174 263 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 333 369 - -
Vifaun20431g00004 1125 SMART DIRP_2 608 709 IPR033471 -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 186 201 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 226 246 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 479 503 - -
Vifaun20431g00004 1125 CDD SANT 47 88 IPR001005 -
Vifaun20431g00004 1125 Coils Coil 846 866 - -
Vifaun20431g00004 1125 MobiDBLite consensus disorder prediction 247 263 - -
Vifaun20431g00004 1125 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Vifaun20431g00004 1125 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Vifaun20431g00004 1125 PANTHER LIN-9 1 1125 IPR010561 GO:0006351|GO:0017053
Vifaun20431g00004 1125 SMART sant 43 91 IPR001005 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifaun20431g00004 DIRP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun20431g00004 - - gmx:100816217 1561.2