Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun20431g00001 ATGGCACCTCCAAGGAAGTCTAGAAGTGTGAATAAGCGGTTTACAAATACAAATGATCTTTCTCCTGAGAAAGATGGAGTTGGCTCAAGTAAAAACAAGCACAGGAAGAAGAAACTGTCTAATAAATTGGGATCTCAGTGGAGTAAGCAGGAACTTGAGCGATTCTATGAAGCATACAGAAAATATGGGAAAGATTGGAAGAAGGTGGCTGCTGCTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGGACGGCTTCTGTTGTGGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAAGGAGAGCAATGATGCACCAGGATCTCGGAAACCTGTGAAACGAAAGCGTGAAAAAATTCAGTTTAGTGTTTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTATCCAGCCTCGTGCAGTTGGGAAGAGGACACCCCGAGTTCCAGTCTACCACTCTTACAAAGATGATAGGGAAAATTATGTTTCACCTAATAAAAGAAGTTTGAAGTCCACTGCTGATGCTAATGATGACGAAGCTGCACATGTAGCTTTGACATTAACCAGGGCTTCACAAAGAGGAGACTCTCCCCTTTCTCAAACACCACATAGGAGAGCAGGGCAGAAGTCCTCTCTTGTTCAGAGCCGGGAAAGAAAGCAGCAAATATCAGAAAAGACTCGTGCCAAGTTACACAATGTTCCTGTGGGTGAAGATTTTGTGGAAGGTAGTCTAGAAAGCAGAGGAGCTGAAAATGGAGAATATGCTAGAGATACTAGTTCCTTGATAGATATGGAAGGAACGAGCACCGCTGGAGTTCTTCTAAAGAAAGGAAAATTTTATAGAAAAAAAGAGAAATTGGAAAATATTGGAAATGATCAGCTTGATGATGGAGGAGAAGCATGCAGTGGTACTGAAGAAGGACTTAGTGTTAGGTCTTTGAAGGAAAATAATATGGAGGGTACTAATGAAAGGCTTGAGCAATTCTCTCCAACAAGTCAGCGGAAAAAAAGCCAAAACCTCTTTTTTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGACATCTAAAGTAGAATCTGATTCACCTGTCCAGTTGAAGGGAGAAAGAATGACTGTTGTTAAAGATGACAAGTCTGCTTTACCTGAAGCAACTTCAACAAGTCATAAGAGAAATAAAGTTAGACTCCGCGGGGTCTCTGTAGCCGACACTTCAACGTCCAAAAAAGCTAAACTCGGAAAAGATATAGCAAATGATACCAGTGCTCTTTCTGAATCAAAAGAGCAGCTTCCGTTTGCTGATAAAACATGGAAAAGAAAGCACAAGTCCACTGTTTCAAAGGCTGTGGATGATGGGAACAAACCTGCAATTAAAGGAAAACAAACTGATCATGTTATTGCCTCACCAAAACAATTGAAGATGGTCAAACCATCAGAGGTTGTCTTGCGTGGTGATCAGAAAGTCTTAGCAATATCAACCGCTGAAATTCCACTTTTGAGTGAAATTAGTTCTCCAACCAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCTAAAGAGAAGTCTTCTGAGAATATATTGAAAAACAAACCTAATAACTACTCTACCCAAAAGGAAAAGCTTTCCAGTTGCTTGTCATCTTCTTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTGGGGCTGGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGTAAACCACGCAGGTTTTCTGAACATTTTTTACACGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAGCATTATTCTGAGCTGCGGACTGGTGTCAGAGACGGACTTCCGACAGATTTAGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACTGTTGACCATGACAAGTGCAGAATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTATAACTAAAGAACCACAGATTAATGGAAATTCAAGTTTTGGGGGATGTGAAATGCATTCCTCACCTGTAAAGGTACACTCCTCTTCAAGTGCTTCAGTAAAGCAAGGAAAGGTGGATGCTAACCATGCCACTTCCCAGACCAATATTGATAACCTCTGTGCTCAAGCTGCTTGTGCTCAACCGTCTCAAGTGATGCAACATGAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAGAAGGAGACAGTGCTAATAGAACTTCGAAATGCAAATAATGGCATATTGGAAAATCAAAACGGCATAGAATGTTTAAAAGATCCCGAAGGTTTCAAGAAGCACTATGCCACGGTTTCTGATACCATGCTTCAATTAAGGCAACGCAACACCTACATGGACAACTCTTTCCCACCATGGATGAAGCCCAAAGCAGATTTTGAAGTTAATGATGATCTTCCTAGTGTGTTGGATAATTCTATGACACAAGAGTCTAGGTCAACTGTCATTGAAATTGTTAAAAGATCCAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCTACAAAGGAAGGTAAAGATGCTATTACGAGGATTGGACAGGCATTGGATTCTATTGATTATCAGCAATTGTCCTCTAAGTACAGGTTGCCTGTGATAAGGTCCCAAGATCAAGTGAATGGCAGTTTTTATCAGCATAATCAATCGACTTGCAAAGCATCCGAGCCTTTACTTAATGATGCATCTGGTCCAAAATTGCATAAAGATTCTGATGAAGTTGATTTTGAAATACCGTCAGAGCTCATCACTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACAGAACGACAATACCCTCCAGCAGATGTGGCTCGGATATTAGATTCTGCTGTTACCAGCTTGCAACCGTGCGATCCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3348 0.4122 MAPPRKSRSVNKRFTNTNDLSPEKDGVGSSKNKHRKKKLSNKLGSQWSKQELERFYEAYRKYGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSEKESNDAPGSRKPVKRKREKIQFSVSKDPVQSQSVTSSDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKDDRENYVSPNKRSLKSTADANDDEAAHVALTLTRASQRGDSPLSQTPHRRAGQKSSLVQSRERKQQISEKTRAKLHNVPVGEDFVEGSLESRGAENGEYARDTSSLIDMEGTSTAGVLLKKGKFYRKKEKLENIGNDQLDDGGEACSGTEEGLSVRSLKENNMEGTNERLEQFSPTSQRKKSQNLFFGDEIHALNALQTLADLSLMMPTSKVESDSPVQLKGERMTVVKDDKSALPEATSTSHKRNKVRLRGVSVADTSTSKKAKLGKDIANDTSALSESKEQLPFADKTWKRKHKSTVSKAVDDGNKPAIKGKQTDHVIASPKQLKMVKPSEVVLRGDQKVLAISTAEIPLLSEISSPTKQRSRRKMIFQRPSMPKEKSSENILKNKPNNYSTQKEKLSSCLSSSLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRTGVRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNPLDNMPEALRRQIGARKASFITKEPQINGNSSFGGCEMHSSPVKVHSSSSASVKQGKVDANHATSQTNIDNLCAQAACAQPSQVMQHEAKEADIHALSELKRALDKKETVLIELRNANNGILENQNGIECLKDPEGFKKHYATVSDTMLQLRQRNTYMDNSFPPWMKPKADFEVNDDLPSVLDNSMTQESRSTVIEIVKRSRLRAHAMLDAAFQAWSQATKEGKDAITRIGQALDSIDYQQLSSKYRLPVIRSQDQVNGSFYQHNQSTCKASEPLLNDASGPKLHKDSDEVDFEIPSELITSCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDPRNLPIYREIQMCMGRIKTQILALIPT 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun20431g00001 1115 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 9 25 - -
Vifaun20431g00001 1115 Pfam DIRP 608 709 IPR033471 -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 116 158 - -
Vifaun20431g00001 1115 Coils Coil 661 681 - -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 174 297 - -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 1 44 - -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 116 144 - -
Vifaun20431g00001 1115 PANTHER LIN-9 1 1115 IPR010561 GO:0006351|GO:0017053
Vifaun20431g00001 1115 FunFam Protein ALWAYS EARLY 3 isoform A 3 99 - -
Vifaun20431g00001 1115 Gene3D - 5 99 - -
Vifaun20431g00001 1115 Coils Coil 847 867 - -
Vifaun20431g00001 1115 SMART DIRP_2 609 710 IPR033471 -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 186 201 - -
Vifaun20431g00001 1115 CDD SANT 47 88 IPR001005 -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 255 271 - -
Vifaun20431g00001 1115 Pfam Myb-like DNA-binding domain 45 82 IPR001005 -
Vifaun20431g00001 1115 SUPERFAMILY Homeodomain-like 41 90 IPR009057 -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 565 584 - -
Vifaun20431g00001 1115 SMART sant 43 91 IPR001005 -
Vifaun20431g00001 1115 MobiDBLite consensus disorder prediction 226 254 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifaun20431g00001 DIRP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun20431g00001 - - gmx:100816217 1540.4