Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun1965g00002 ATGGGTCGTCGCAAAATTGAGATTGAGATGGTGAAAGATCCCAACACAAGACAAGTCACTTTCTCAAAGCGTCGAACGGGCTTATTCAAAAAAGCGAATGAATTGTCAATTTTGTGCGGAGCAGAAGTAGCGATTGTTGTGTTTTCTCCAGGTAACAAACCATATTCTTTTGGTCATCCAGGAGTTGATGTTGTTGCATCCAACTATCTTCAACAAGAGAATATAAATATACCAAATGATTCTCAAGGAAACGCCTCTTTTGATGCTCCTAATATGGAAAACTTGAATCAAGAACTTGCTGAGGTATTGGCCCAAATTCGGGAAAGTGAAAAACAAGCTGAGAAACATGATGAGATCTTGAAGAAAAACGATGTGAAAAAACTCTCTGAACTTGAAGGATTGAAAGATTCATATAAAGAATTTCAAGATTTGGTTAAGTTACGTCTTAGTGATCTTGAAATATCAGAATATTTGATGCTTCTTGCTCGACATCCAGTGGTAGGAGTGAAAGCGAAATCCACAAAAAAGAAAAGAAGAAAAAATTAA 546 0.3645 MGRRKIEIEMVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVASNYLQQENINIPNDSQGNASFDAPNMENLNQELAEVLAQIRESEKQAEKHDEILKKNDVKKLSELEGLKDSYKEFQDLVKLRLSDLEISEYLMLLARHPVVGVKAKSTKKKRRKN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun1965g00002 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifaun1965g00002 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifaun1965g00002 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifaun1965g00002 181 Coils Coil 92 119 - -
Vifaun1965g00002 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifaun1965g00002 181 PANTHER MADS BOX PROTEIN 3 145 - -
Vifaun1965g00002 181 FunFam Agamous-like MADS-box protein AGL62 13 77 - -
Vifaun1965g00002 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vifaun1965g00002 181 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Vifaun1965g00002 181 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Vifaun1965g00002 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun1965g00002 1 163 Type I MADS-box Gene Family AT2G34440 43.605 8.29e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifaun1965g00002 SRF-TF 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun1965g00002 - - mtr:11439559 235.343