Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun16137g00001 ATGGCAATGGACGATTCACATTCATCTCTGTTCAACCTAGGTATTCTCGACACTCTCACCCAAGACGAACTTCACGAAATCCTCGACAGCTACGACGCCTTCTGCAACGCCACACAATCTCTTCTCGGCGGTGCCGGCGACCTCTCATACGGTGCTCAATTTGTTTCCCATGTTCACACCCTATTCATGGAGTTGACTTTAACTGAACAAGATGCCGCTCATTGGGTTTACAGAGGTGAAGGTGCTGCTAATATTGTTGTCTCATACACTGGTTCTTCTCCTTCTTACGAACAAGAGAAGAATGAGTTAGGGCATGAACTCAAAAGCTGGGATTGGGGTCTAAATTTTACGTGGTTGGTGTTTCCATGGGCTGACAAGTTGTTTGGAACTGTCTTAAGCACATACCTCACAGGTTCCTTGATTAAATTGTTTGTTCAAACACAGGTTCAGGAAAGGAATGGTGACGGGAAGGCTCAAGATTCAGAGCCTCCAACTCCCCATTCTGTTCTGAAAATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCTAGTGTTGCGCAATGCATTGAGCAGCTGCGTCAGAGCTCGTCTTCTGTGCATGAGAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATATGCGTGAAAATGCATTTAGTGCTGTTGGATCTCACTCTCAGGCTGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGATCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGCTGTATTCCTCCATTGCTTGGTCTCCTAAAGTCCAGTTCTACTGAAGCCCGAATTGCCGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGTGCAAAAGATCACGTTGGTTCCAAAATTTTTTCAACTGAAGGAGTAGTACCCGTGCTTTGGGAGCAGTTGCGAGCTGGCCCGAAAACCGAAAATGTAGTTGAAACTTTATTGACAGGAACATTGAAAAATCTCTCCAACAGTGCTGAGGGATTCTGGAACTCAACAGTTCAATCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCCAGTGTTTGCTTTTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCGAAGGTGTTGAGCGCAGAGGTGACTAAACAACTTTTGAAACTGTTAGGCCCTGGTAATGATGACCTTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTTCTCAGTGCAAAGAAGCCAGGCGAGAGATAGCCAGTTCTAATGGCATTCCTGCTCTAATCAATGCTACCATAGCTCCTTCGAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGCGCTTTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGCCGAATCTTATTTTGGATACTGAAATAGCAAAGAAAGTTGTTCTAGAAGAAGTTATCTTGCCTGCCACCAGAGTATTACGTGAAGGCACAAATTCTGGAAAAACTCGTGCTGCAGCTGCTATCGCTCGCCTCTTACATTCTCAGAAAGTTGATAATGCTGTTACTGATTGTGTGAATCGCGCCGGCACTGTTCTTGCATTAGTTTCCTTTTTGGATTCTTCTGTCAATGAATCTGTTTCCACGTCAGAGGCTCTAGAAATTTGGCTATGCAAACGCCCTCTTAATATTCTATATGTTATGATATTTGGAAACAATAGGATTTGGTAA 1833 0.4424 MAMDDSHSSLFNLGILDTLTQDELHEILDSYDAFCNATQSLLGGAGDLSYGAQFVSHVHTLFMELTLTEQDAAHWVYRGEGAANIVVSYTGSSPSYEQEKNELGHELKSWDWGLNFTWLVFPWADKLFGTVLSTYLTGSLIKLFVQTQVQERNGDGKAQDSEPPTPHSVLKMGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLLDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEARIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWEQLRAGPKTENVVETLLTGTLKNLSNSAEGFWNSTVQSGGVDILVKLLATGQPSTLASVCFLLASVMMEDASVCSKVLSAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSSQCKEARREIASSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLEPNLILDTEIAKKVVLEEVILPATRVLREGTNSGKTRAAAAIARLLHSQKVDNAVTDCVNRAGTVLALVSFLDSSVNESVSTSEALEIWLCKRPLNILYVMIFGNNRIW 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun16137g00001 610 Coils Coil 425 445 - -
Vifaun16137g00001 610 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 504 589 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifaun16137g00001 610 Gene3D - 176 589 IPR011989 -
Vifaun16137g00001 610 Pfam Armadillo/beta-catenin-like repeat 232 262 IPR000225 GO:0005515
Vifaun16137g00001 610 Gene3D - 59 100 IPR043001 -
Vifaun16137g00001 610 SMART arm_5 439 488 IPR000225 GO:0005515
Vifaun16137g00001 610 SMART arm_5 264 304 IPR000225 GO:0005515
Vifaun16137g00001 610 SMART arm_5 396 437 IPR000225 GO:0005515
Vifaun16137g00001 610 SMART arm_5 222 263 IPR000225 GO:0005515
Vifaun16137g00001 610 SUPERFAMILY ARM repeat 195 578 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun16137g00001 202 379 U-box Gene Family AT2G28830 30.556 7.31e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun16137g00001 - - cam:101494820 624.394