Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun15916g00001 ATGGATGAATCTCAAAATTTGATATGGATGAAAAGGAAACAAGTCTTGAACAACAACAACAACAACAACAACAACAACAACAACAGCTCTTGGGAGGAAAAAGCTTTTGCTGAAGATGCAGCTAGGATACTTGGTGGATGTATATGGCCACCAAGATCCTACTCATGTCACTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGACGAGACCGAGCTAGGCTCAAACAAACTCTTACCAAAAATAATGACTTTACAACAAGTAGAGTTTCAACTACATCTACACACGAAAATTGTTTTCAGATTCAGCCCAACGTGTCGTCGTCTTCAATTAGATGGGGGAATAACCACATGGAGTTTCATGATTCTGAACCAAAAGGGCTACTAGTTCATGCAAGGGAACAGTTTTTCAAAGGCTATGGTTATAATGATTATGTTGAAACAAGTTTGTCTATGGGACAACATAATTCAATGTTTGTCCAAAATTTGCAAACTGTTGATGATTCATGTGGGGACAAAGGCGTAAATTATAAAAAATCAAAGACAGCAGCTTCTATTTCATCTTCACTTCCTGTCTTGCTGAAGCCATGTTTGAATGATAGATGTCTAACTTTTCAGTCTGCAGTTGGAATTAAGCCTGGAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAATTAACACAGAAAGTTTAG 720 0.3806 MDESQNLIWMKRKQVLNNNNNNNNNNNNSSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQTLTKNNDFTTSRVSTTSTHENCFQIQPNVSSSSIRWGNNHMEFHDSEPKGLLVHAREQFFKGYGYNDYVETSLSMGQHNSMFVQNLQTVDDSCGDKGVNYKKSKTAASISSSLPVLLKPCLNDRCLTFQSAVGIKPGMEDLDLELRLGKLTQKV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun15916g00001 239 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Vifaun15916g00001 239 Pfam C2H2-type zinc finger 54 78 - -
Vifaun15916g00001 239 SUPERFAMILY beta-beta-alpha zinc fingers 51 80 IPR036236 -
Vifaun15916g00001 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Vifaun15916g00001 239 PANTHER OS07G0101800 PROTEIN 25 234 - -
Vifaun15916g00001 239 Gene3D Classic Zinc Finger 51 109 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun15916g00001 25 86 C2H2 Transcription Factor Family AT2G37740 74.194 4.50e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifaun15916g00001 zf-C2H2_6 3.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun15916g00001 - - aprc:113851273 290.812