Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun1483g00001 ATGAGTTCACTAAACTTGAACAATGATGGTTATGGTTTATCTTTTGACTTGAATGCTCCTTTTTTATCTCAAGTTCCTTCTTCATCTTCTGCTCCCTATTTGGGTCATCATGAAGTGTATGAAAAGTCTGAAATACCCTTTGAAATTTTGAACCCTTTAGTGGTCCACCCTAATGGGAATGAGAAAATGGTTCCAAACAATGAAGGGAATTTTGGGAATGGTAAAAAAAACTTGTCTTTGATAAATGATGAGACTGAAAATGAAACTAAAGACATGTTTTTTGAAACACAGAAATTTATGAACTCTAATCTCTTTATTAGAGGTCATTGGAGGCCAAATGAAGATGCTAAGCTTAAAGCACTAGTTGCTGAACATGGTGCTCAAAATTGGAACACAATTGCTGAACATCTACATGGTAGATCAGGGAAAAGCTGCAGATTAAGGTGGTTTAATCAGCTAGATCCTAAAATCAATAGGGCATCTTTTAGCAAGGAAGAAGAGTATAAGCTTTTGGAAGCTCACAAATTTTATGGGAACAAATGGGCAGCCATCTGTAAACTCTTTCCTGGAAGGACAGACAATGCTGTCAAGAATCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGCAATCATCTAGAAAGAAAAGGCCAACATTTCAAACTCCTTCAAATGAATCACTCACAAGTAGTACTATTGATGAGTCTAACTCAAATTTCCTCAAATTCAATGTTGCTACTATGCCTTTTCTCAATTACCAATTCTATGGATCACAAATGGGTTTACTTGGAGCAAGACACCAAGAAGCTAGGGATTTTGGTTTTGACAAGATTTTCAGTGCAATGAAAGGTTCATCTATAGGTTACATGGAAAAGCTGAAGAGTGTGGACCAATCCAATTATTCAGATTCAAAGTCAGAAGTTTCAGTATCTGAGTCAGTTGCAACAAACAGGAACAATGAAACATTTTTTGGAGACAAGATTAAGAAGCCATTTATTGACTTTCTTGGAGTAGGTTATACTTAG 1026 0.3645 MSSLNLNNDGYGLSFDLNAPFLSQVPSSSSAPYLGHHEVYEKSEIPFEILNPLVVHPNGNEKMVPNNEGNFGNGKKNLSLINDETENETKDMFFETQKFMNSNLFIRGHWRPNEDAKLKALVAEHGAQNWNTIAEHLHGRSGKSCRLRWFNQLDPKINRASFSKEEEYKLLEAHKFYGNKWAAICKLFPGRTDNAVKNHWHVIMARRQREQSSRKKRPTFQTPSNESLTSSTIDESNSNFLKFNVATMPFLNYQFYGSQMGLLGARHQEARDFGFDKIFSAMKGSSIGYMEKLKSVDQSNYSDSKSEVSVSESVATNRNNETFFGDKIKKPFIDFLGVGYT 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun1483g00001 341 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Vifaun1483g00001 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 153 IPR017930 -
Vifaun1483g00001 341 PANTHER MYB PROTEIN-RELATED 107 225 - -
Vifaun1483g00001 341 SMART sant 106 155 IPR001005 -
Vifaun1483g00001 341 SMART sant 158 206 IPR001005 -
Vifaun1483g00001 341 Gene3D - 106 158 - -
Vifaun1483g00001 341 CDD SANT 161 201 IPR001005 -
Vifaun1483g00001 341 Gene3D - 161 230 - -
Vifaun1483g00001 341 MobiDBLite consensus disorder prediction 207 232 - -
Vifaun1483g00001 341 Pfam Myb-like DNA-binding domain 110 167 - -
Vifaun1483g00001 341 SUPERFAMILY Homeodomain-like 106 200 IPR009057 -
Vifaun1483g00001 341 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Vifaun1483g00001 341 MobiDBLite consensus disorder prediction 217 232 - -
Vifaun1483g00001 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Vifaun1483g00001 341 CDD SANT 110 151 IPR001005 -
Vifaun1483g00001 341 FunFam MYB transcription factor 107 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun1483g00001 82 339 MYB Transcription Factor Family AT5G17800 41.887 8.74e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifaun1483g00001 Myb_DNA-bind_6 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun1483g00001 K09422 - qsu:111993092 250.366