Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun14065g00001 ATGGAAGAAAAACAAAAACCATTGTTAATGTTCTGCATTGTGCTATCAATCTTATCTCTAGCAACAAACGTATCATGTTTGAACCAAGATGGTCTCTACCTGTACCAATTCAAGCTCACCTTAGACGATCCCGACTCCTCTCTCTCTTCCTGGAACCCATCAGACACCACACCATGCAACTGGTACGGCGTCCGTTGCGACGCCACCAACACCACCGTAACAGAACTCGACCTCTCCGACACCAACATCCAAGGCCCATTCACAGCATCAATCCTATGCCGTCTCCCCAACCTCTCCTCCATCAACCTCTTCAACAACTCCATTAACCAAAGCTTCCCCCTCCAAATCTCCCTCTGTCAAAACCTCCTCCACCTCGACCTCTCTCAGAATCTCCTCACCGGCCCCCTCCCGGAAATCCTCTCCACTCTCACTAACCTCCGTTACCTCGACCTCACCGGAAACAACTTCTCCGGTAACATACCACTCTCCTTCGGCACATTCCAGAAACTCGAAGTACTCTCACTCGTGTCCAATCTTCTAGAAGGTACCATTCCTCCGTCTCTTGGAAACATCACTACTTTGAAAATGCTTAACCTCTCTTACAACCCGTTTTTCCCGGGTCGGATCCCTTCCGAACTCGGAAACCTAACTCACCTTGAAGTTCTATGGTTAACGCAATGCAACCTTGTTGGTGTGATTCCTGAAACTCTCGGGAAGCTGAAAAAGCTTAAGGATTTGGACCTTGCGTTGAATGATCTTTACGGTTCTATTCCGAGTTCGCTCACTGAGTTAACGAGTTTGAGACAGATTGAGTTGTATAATAACTCGTTATCCGGTGAGTTGCCGAGGGGAATGGGGAAGCTTACTAATTTGAGGCTTCTTGATGCGTCCATGAATCATTTGACGGGGAGGATTCCGGAGGACCTTTGTTCGTTGCCGTTGGAGAGTTTGAATCTCTATGAGAATCGTTTTGAGGGTGAGTTGCCGGCGAGTATAGCTGACTCGCCGAATCTCTATGAGTTAAGGTTGTTTGGAAACCGGCTTTCCGGAAAGTTGCCGGAGAATCTCGGGAAACGGTCTCCTCTGAGGTGGCTTGACGTTTCGAGTAACCAGTTCTGGGGGAGTATTCCGGCGAGTTTGTGTGATCTTGGTGAGTTAGAGGAGCTTTTGATGATATATAATTTGTTCACCGGTGAGATTCCGGCGAGTTTGGGGACGTGTCAAAGCTTGTCGCGTGTACGTTTAGGTTATAACAGATTCTCCGGTGAGGTTCCGGCGGGGATCTGGGGTCTTCCTCATGTTTATCTTCTCGAACTTGCTCATAACTCGTTTTCCGGTTCCATTTCGAAGACCATTGCCGGAGCAGGGAACCTTTCGTTGTTGATTTTGTCGAAGAACAACTTCTCGGGAACTGTTCCCGATGAGGTTGGGTGGTTGGAAAATCTCGTCGAGTTTTCTGCCGCTGATAACATGTTCAGTGGCCCACTTCCAGATAGTTTGGTCAATCTTGGGCAGCTTGGCATTCTTGATTTTCACAACAACAGGCTTTCTGGGGAACTACCAAAGGGGATTCATTCTTGGAAGAAGCTCAATGATTTGAATTTGGCCAACAATGGAATTGGTGGGAAGATTCCCGATGAGATTGGTAGTTTATCAGTTCTTAATTTTCTTGATCTTTCGCGGAATCAGTTTTCAGGAAAAATCCCTCATGGGTTGCAGAATCTGAAGCTGAATCAGCTGAATTTTTCGTATAATCGACTTTTGGGAGAACTTCCTCCTCAGTTGGCTAAGGAAATGTACAAGTCTAGTTTCTTGGGGAACCCTGGTTTGTGTGGAGATTTGAAAGGTTTGTGTGATGGTAGGAATGAAGTGAAGAATTTGGGTTACGTTTGGTTGCTTCGAGCGATTTTTCTTCTAGCCGTTTTGGTTTTCCTAGTTGGTGTTGTCTGGTTCTATTTTAGGTACAAGAATTTCAAGGAAGCAAAAAGGGCTATTGATAAATCAAAATGGACTTTAATGTCATTCCATAAGCTTGGTTTTGGCGAAGATGAGATTTTGAATTGTCTTGATGAAGATAATGTCATTGGAAGTGGCTCTTCAGGAAAGGTTTACAAGGTTGTACTTAACAGCGGGGAAGCTGTTGCTGTGAAGAAGATATGGGGAGGGGCCAGAAAGGAAGTGGAGAGTGGTGATGCTGAAAAGGGTAGGGTTCAAGACAATGCTTTTGATGCCGAGGTTGAAACTTTGGGAAAAATCAGACACAAGAACATTGTCAAGTTATGGTGTTGCTGTACCACTAGGGATTGTCAGCTTTTGGTTTACGAGTATATGCAAAACGGTAGTCTTGGTGATTTGCTTCATAGTAGTAAAGGAGGGTTGTTGGAATGGCCAACAAGATACAAGATAGCTGTGGATGCGGCAGATGGACTCTCTTATCTCCATCATGATTGTGTTCCGCCAATTGTTCATAGAGATGTTAAATCTAATAATATCTTGTTGGATGGAGACTTTGGTGCAAGGGTGGCTGATTTCGGATTAGCTAAGGTTGTCGAAATCACAGGGAAAGGAATTAAATCCATGTCCATCATTGCTGGTTCTTGTGGCTATATTGCACCAGAATATGCCTACACCCTTAGAGTGAACGAGAAGAGCGACATTTATAGTTTTGGTGTTGTTATACTTGAATTGGTTACTGGAAGACGGCCGGTGGATCCTGAATTCGGGGAGAAAGATTTGGTTAAATGGGTTTGCACTACATTGGATCAGAAAGGTGTGGACCATGTAATTGACTCGAGGCTAGATTCATGTTTCAAAGAAGAAATTTGCAAGGTTTTCAACATTGGCCTAATGTGCACTAGTCCTCTTCCAATCAACCGGCCTTCGATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTAGGAATAGAGAACCAAATGAAACCTGCAAAGAAAGATGGAAAATTAACCCCTTATTACTATGATGATGCTTCTGATCATGGAAGTGTTGTTTGA 3009 0.4463 MEEKQKPLLMFCIVLSILSLATNVSCLNQDGLYLYQFKLTLDDPDSSLSSWNPSDTTPCNWYGVRCDATNTTVTELDLSDTNIQGPFTASILCRLPNLSSINLFNNSINQSFPLQISLCQNLLHLDLSQNLLTGPLPEILSTLTNLRYLDLTGNNFSGNIPLSFGTFQKLEVLSLVSNLLEGTIPPSLGNITTLKMLNLSYNPFFPGRIPSELGNLTHLEVLWLTQCNLVGVIPETLGKLKKLKDLDLALNDLYGSIPSSLTELTSLRQIELYNNSLSGELPRGMGKLTNLRLLDASMNHLTGRIPEDLCSLPLESLNLYENRFEGELPASIADSPNLYELRLFGNRLSGKLPENLGKRSPLRWLDVSSNQFWGSIPASLCDLGELEELLMIYNLFTGEIPASLGTCQSLSRVRLGYNRFSGEVPAGIWGLPHVYLLELAHNSFSGSISKTIAGAGNLSLLILSKNNFSGTVPDEVGWLENLVEFSAADNMFSGPLPDSLVNLGQLGILDFHNNRLSGELPKGIHSWKKLNDLNLANNGIGGKIPDEIGSLSVLNFLDLSRNQFSGKIPHGLQNLKLNQLNFSYNRLLGELPPQLAKEMYKSSFLGNPGLCGDLKGLCDGRNEVKNLGYVWLLRAIFLLAVLVFLVGVVWFYFRYKNFKEAKRAIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLNSGEAVAVKKIWGGARKEVESGDAEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCQLLVYEYMQNGSLGDLLHSSKGGLLEWPTRYKIAVDAADGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGLAKVVEITGKGIKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHVIDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGIENQMKPAKKDGKLTPYYYDDASDHGSVV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun14065g00001 1002 Pfam Protein kinase domain 691 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun14065g00001 1002 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 385 970 - -
Vifaun14065g00001 1002 Pfam Leucine Rich Repeat 145 165 IPR001611 GO:0005515
Vifaun14065g00001 1002 Gene3D Ribonuclease Inhibitor 182 308 IPR032675 -
Vifaun14065g00001 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 27 191 - -
Vifaun14065g00001 1002 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Vifaun14065g00001 1002 SUPERFAMILY L domain-like 168 425 - -
Vifaun14065g00001 1002 ProSiteProfiles Protein kinase domain profile. 689 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun14065g00001 1002 Gene3D Phosphorylase Kinase; domain 1 673 776 - -
Vifaun14065g00001 1002 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vifaun14065g00001 1002 SUPERFAMILY RNI-like 353 592 - -
Vifaun14065g00001 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 986 - -
Vifaun14065g00001 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Vifaun14065g00001 1002 SUPERFAMILY Protein kinase-like (PK-like) 685 970 IPR011009 -
Vifaun14065g00001 1002 Gene3D Ribonuclease Inhibitor 314 621 IPR032675 -
Vifaun14065g00001 1002 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Vifaun14065g00001 1002 SUPERFAMILY L domain-like 25 204 - -
Vifaun14065g00001 1002 SMART LRR_typ_2 264 287 IPR003591 -
Vifaun14065g00001 1002 SMART LRR_typ_2 143 169 IPR003591 -
Vifaun14065g00001 1002 SMART LRR_typ_2 551 574 IPR003591 -
Vifaun14065g00001 1002 SMART LRR_typ_2 383 407 IPR003591 -
Vifaun14065g00001 1002 SMART LRR_typ_2 216 239 IPR003591 -
Vifaun14065g00001 1002 SMART LRR_typ_2 288 312 IPR003591 -
Vifaun14065g00001 1002 SMART LRR_typ_2 503 526 IPR003591 -
Vifaun14065g00001 1002 SMART LRR_typ_2 95 119 IPR003591 -
Vifaun14065g00001 1002 Gene3D Transferase(Phosphotransferase) domain 1 777 993 - -
Vifaun14065g00001 1002 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Vifaun14065g00001 1002 FunFam Receptor-like protein kinase HSL1 313 620 - -
Vifaun14065g00001 1002 FunFam Receptor-like protein kinase HSL1 673 776 - -
Vifaun14065g00001 1002 SMART serkin_6 689 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun14065g00001 24 1002 Receptor kinase-like Gene Family AT1G28440 70.690 0.0 1420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifaun14065g00001 Pkinase 9.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun14065g00001 - - gmx:100819887 1693.32