Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun13777g00001 ATGTCTGGAGAATCCGCCACCGCTATTCACAAGGGTCAAGTTGATCTCTTAGGCTTCATAGATTGGATTGGTGTTGAATGCCTCAATCAAAGCACCACTCTCTCTGTTTCCAGTGCTATCAAACAGAGATTTTGCTTGAAAAGGGGAAGATCAAAGCTGAGGATAAATAGGAAAGGTTGGTTAAATTGCAAGGCTAACTCAGATGAAAGGTTGAGCTGTATGTCCATTGTGTATAATGAACTGAACTGGATATGGTTAGTTTTGTATATATGCATGGCTTCAAAAACCAACAAGGTATCTATTGTTAAACCTTGGACTACTGGAATAAGTGGACAGCTTCAAAAAGCACTTGTGACAGGTGTGCCAAAGCTAAAGAGAATAGATCTTGAAGTAGCATGTGAAGATTTTAGTAATGTAATCGGTAAATCACCGATTGGTACGTTGTACAAAGGAACTTTATCTAGTGGAGTTGAAATTGCTGTAGCTTCTGTTTCTCTGACATTATCCAAGACTTGGACAAAGAATTTAGAAGCTCAGTTTAAGAACAAGATAGACACACTATCAAAAGTGAACCATAGGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAAGAACCTTTTACCAGAATGTTGGTTTTTGAATATGCGCCAAATGGAACACTATTCGAGCATTTACACGTGAAAGAAGCTGAGCACTTGAACTGGGGACCGAGACTTAGAATTGCGACAGGAATGGCTTACTGCCTACAATACATGCATGGATTAGACCCTCCTGTGGCCCTTACCAATCTGAGTTCTTCAACTGTCCATCTAACAGATGATCATGCAGCAAAAATCTCGGATTTGAGTTTCTCCCGCGAAACAGATTCATCTGAAAAGAAACCTGATGGTAGAAAAGACATTGATATTGATATGACGCAATCAACAAGTCCAGCGAGATATCGGATTAGGAAGACTCTGGAAAAGCTCAGACCTCCATCAGTGACAGAGCTGTTGTTGTCTCATAATGGTGATCAAATACTCGAAGGTTGTGTGACAAATTTTTTCGTTGTTTGCTGTAAGAGTTTGTTTTCATCCTCCAATTTTGTGATGGGGTTGAAACCGTGGCTACATCCTGCTCCAACTTATAGACCTATAGAAAGATTTTGGGATAGTGATGAAGAAGCTCCTGGTCCTCATTATGGACATAGTCTAACCATTGTTGCCGCTACTTGA 1218 0.3982 MSGESATAIHKGQVDLLGFIDWIGVECLNQSTTLSVSSAIKQRFCLKRGRSKLRINRKGWLNCKANSDERLSCMSIVYNELNWIWLVLYICMASKTNKVSIVKPWTTGISGQLQKALVTGVPKLKRIDLEVACEDFSNVIGKSPIGTLYKGTLSSGVEIAVASVSLTLSKTWTKNLEAQFKNKIDTLSKVNHRNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVKEAEHLNWGPRLRIATGMAYCLQYMHGLDPPVALTNLSSSTVHLTDDHAAKISDLSFSRETDSSEKKPDGRKDIDIDMTQSTSPARYRIRKTLEKLRPPSVTELLLSHNGDQILEGCVTNFFVVCCKSLFSSSNFVMGLKPWLHPAPTYRPIERFWDSDEEAPGPHYGHSLTIVAAT 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun13777g00001 405 SUPERFAMILY Protein kinase-like (PK-like) 118 293 IPR011009 -
Vifaun13777g00001 405 Gene3D Transferase(Phosphotransferase) domain 1 217 342 - -
Vifaun13777g00001 405 PANTHER PROTEIN MALE DISCOVERER 2 83 305 - -
Vifaun13777g00001 405 Gene3D Phosphorylase Kinase; domain 1 107 216 - -
Vifaun13777g00001 405 ProSiteProfiles Protein kinase domain profile. 134 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun13777g00001 405 Pfam Protein tyrosine and serine/threonine kinase 137 295 IPR001245 GO:0004672|GO:0006468
Vifaun13777g00001 405 MobiDBLite consensus disorder prediction 285 305 - -
Vifaun13777g00001 405 FunFam Inactive receptor-like serine/threonine-protein kinase 108 216 - -
Vifaun13777g00001 405 MobiDBLite consensus disorder prediction 285 304 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun13777g00001 129 290 Receptor kinase-like Gene Family AT1G67720 37.805 6.97e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifaun13777g00001 PK_Tyr_Ser-Thr 1.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun13777g00001 - - gmx:100807163 330.872