Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun1360g00003 ATGGCTACTGCTGCTGCAGGCGTAGCCTCCTTGTTTTCATCTTCCATCAACACTGTCAAATCTTCACGTTCCTCAAACCGCATGTTTGCATCTGTTGTTATACCACAATCCTCAGTTGAACCTTTGTGCATTGGTACAACAATCTCATCACAAAAGTTATGGATGCCTAGATTCTATGTTGCTGTTGCTCAGGAAGAGGCTGTTGTGGCTGTTGATGATGAAGAGAAGGTTGTGGTAGAGGAGGAAGAAAAAGAAAATGAAGAAGGACAAGGAGAGAAGGAGAATGGAGAGGAGATTGTAGCAGAAGAAGACACTAGGACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCAAAACTTGCAGGGTTAATTGAGGAATATGGTAGCGCAGAACTAGTTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGCCACCATGACTTGTGTTGAAGATTGTAAAGCAGTAATTGAAAATCTTGATGGAAAAGAGTTCATGGGGCGAACCTTGCGGGTGAATTTCTCAGACAAACCGAAGCCAAAAGAATCGTTGTACCCTGAAACCGAATACAAGCTCTTTATTGGGAACTTGTCTTGGAAAGTAACTTCTGAGATTCTGACAGAAGCCTTTCAAGAGCATGGAACTGTGGTTGGAGCTCGGGTGATATATGATGGCGAAACTGGAAATTCTCGTGGCTATGGCTTTGTTTCCTATGCCAATAAATCAGAAATGGAAGCTGCCCTTACAATCATGAATGATGTGGAACTAGAAGGACGGGCATTGCGCGTAAGTTTGGCTCAAGGAAAAAGCTAG 837 0.4277 MATAAAGVASLFSSSINTVKSSRSSNRMFASVVIPQSSVEPLCIGTTISSQKLWMPRFYVAVAQEEAVVAVDDEEKVVVEEEEKENEEGQGEKENGEEIVAEEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKAVIENLDGKEFMGRTLRVNFSDKPKPKESLYPETEYKLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVELEGRALRVSLAQGKS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun1360g00003 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Vifaun1360g00003 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 270 IPR000504 GO:0003723
Vifaun1360g00003 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Vifaun1360g00003 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vifaun1360g00003 278 SMART rrm1_1 199 272 IPR000504 GO:0003723
Vifaun1360g00003 278 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vifaun1360g00003 278 SUPERFAMILY RNA-binding domain, RBD 194 277 IPR035979 GO:0003676
Vifaun1360g00003 278 Coils Coil 79 99 - -
Vifaun1360g00003 278 FunFam 31 kDa ribonucleoprotein, chloroplastic 63 188 - -
Vifaun1360g00003 278 Gene3D - 61 189 IPR012677 -
Vifaun1360g00003 278 CDD RRM2_NsCP33_like 199 274 - -
Vifaun1360g00003 278 SUPERFAMILY RNA-binding domain, RBD 99 190 IPR035979 GO:0003676
Vifaun1360g00003 278 PANTHER OS02G0815200 PROTEIN 31 277 - -
Vifaun1360g00003 278 FunFam 28 kDa ribonucleoprotein, chloroplastic 189 278 - -
Vifaun1360g00003 278 Gene3D - 190 278 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun1360g00003 109 278 Eukaryotic Initiation Factors Gene Family AT4G34110 27.485 4.49e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun1360g00003 - - gmx:100820203 347.051