Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun13564g00002 ATGGAAGATATTTACAATATCAACAAGATGAATCTCCCTTTTGTATCTTGTTTGGAAAACGTTAACGTTTCTTCTTATACTCCTGCTACTACTACTACTTCGGAATTGCATCTAGGACTCGTTCGTGCTGTTACTAATAATAACTGCCAACATCAACCGGATCTAATCGGGTCGGATATATCGGATCGGATTATCAAGAACCAGATCGCCACTCATCCTCTTTATCCAAATCTACTATCTGCTTTCATAGAATGCCAAAAGGTTGGAGCACCGACGGAAGTTGTGTCTCTTCTCGAAGAAATAGGCCGTGAAAGCCACCACACCAATGTTCTACGTCAGATAGGAGATGATCCTGACCTTGATCAATTCATGGAATCATACTGTGAAGTTCTTCATAGATACAAAGAGGAGTTGTGGAAACACATGAATGAAGCGAGTTTATTTTTGTGTGATATTGAATCACAATTGAGCCAACTTTGCAAAGGCACATTAAAAATCTCATCTGATTATAACAACAACCGTTCAGATGAAGCTGCAGGGACATCAGAGGATGAAATGAGCTGTGAAAAAGTTGAAGGTGTTCATGAAGTTTGTGTCTCATCATGTCCAAGTGACAAAGAGCTTAAACAAATGCTCCTTCGTAAATATGGAGGTTATCTTAGTAACTTGAGAAAGGAATTTCTTAAGAAAAGGAAAAAGGGTAAATTACCAAAAGATGCAAGAATAGCATTGCTGGATTGGTGGAATGTTCACTATAGATGGCCTTATCCCACGGAGGAGGAGAAAATGCAGCTATCGGAAATGACTGGACTTGATATAAAGCAGATTAATAACTGGTTCATCAATCAGAGGAAAAGACACTGGAAACCATCTGAAGATATGAGATTTGCTGTTATGGAGGGTGTGAGTAGCATCGGCATAGCAGAACCTCTATAA 936 0.3921 MEDIYNINKMNLPFVSCLENVNVSSYTPATTTTSELHLGLVRAVTNNNCQHQPDLIGSDISDRIIKNQIATHPLYPNLLSAFIECQKVGAPTEVVSLLEEIGRESHHTNVLRQIGDDPDLDQFMESYCEVLHRYKEELWKHMNEASLFLCDIESQLSQLCKGTLKISSDYNNNRSDEAAGTSEDEMSCEKVEGVHEVCVSSCPSDKELKQMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARIALLDWWNVHYRWPYPTEEEKMQLSEMTGLDIKQINNWFINQRKRHWKPSEDMRFAVMEGVSSIGIAEPL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun13564g00002 311 ProSiteProfiles 'Homeobox' domain profile. 227 290 IPR001356 GO:0003677
Vifaun13564g00002 311 SMART ELK_2 207 228 IPR005539 GO:0003677
Vifaun13564g00002 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 297 - -
Vifaun13564g00002 311 Pfam Homeobox KN domain 247 286 IPR008422 GO:0003677|GO:0006355
Vifaun13564g00002 311 SUPERFAMILY Homeodomain-like 229 299 IPR009057 -
Vifaun13564g00002 311 ProSitePatterns 'Homeobox' domain signature. 265 288 IPR017970 GO:0000981|GO:0006355
Vifaun13564g00002 311 Pfam KNOX1 domain 65 106 IPR005540 GO:0003677|GO:0005634
Vifaun13564g00002 311 Pfam ELK domain 207 228 IPR005539 GO:0003677
Vifaun13564g00002 311 ProSiteProfiles ELK domain profile. 207 227 IPR005539 GO:0003677
Vifaun13564g00002 311 Pfam KNOX2 domain 113 160 IPR005541 GO:0003677|GO:0005634
Vifaun13564g00002 311 SMART HOX_1 229 294 IPR001356 GO:0003677
Vifaun13564g00002 311 SMART KNOX2_2 110 161 IPR005541 GO:0003677|GO:0005634
Vifaun13564g00002 311 Gene3D - 225 299 - -
Vifaun13564g00002 311 CDD homeodomain 243 291 IPR001356 GO:0003677
Vifaun13564g00002 311 SMART KNOX1_2 63 107 IPR005540 GO:0003677|GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun13564g00002 33 309 Homeobox Transcription Factor Family AT1G23380 47.959 1.00e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifaun13564g00002 KNOX2 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun13564g00002 - - mtr:11406488 442.195