Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun1349g00006 ATGTCTGAATGTCTTTCATCCACTATATACAAAGCTTACTTTGGTGACGATCCTTTAAGTTCAAAGAAATTTGAAGCCACGGTCACACGTCTTCACCCATCATCTCAGGAATTCATAAACGAGGCTATACCATGGAAGCTTGGACCGCCTACTGTCTTACTTTTTTTGCATGAAGAAGGTCCTTTTCAGGCAATGTATAATGAATTTTCGACAGCCAACATACAGATCGACAAAGATTTCAGTGCTAAGCTTTCCGGGTATGGTTGCGTTGGACATATTCCTGAGGAAGAAATTTCAAGCAGTTCATCAGCTGTTGGAAACCTATCAATGGAGACACTGGAGAAAGGAATGCTCACACCAAAGAGCAATGTGTGGAGCTTTGGAATTTTCCTTCTGGAATTACTTACCGGAAGAAAGAATCTCGATAGTCGCCACCCCAAGGAAGAGAGGAATTTAGTCAAATGGAGCAGACCTTTCTTAGCTGATAATTATCGTTTATCATTGATCATGGACCCTCAACTCAAAGGCCGCTTTCCATCCAAAGCAGCAAGAACAATAGCCGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGATCGACCCACTATGAGAACTGTTGTCGAGCATCTCAAAACGATACAGGATTTGAAGTACTCTTGCAGGTTCCCCACTCCAAGAACCGGCACCATTATCCGGAAAAGAAATGTTCAGATCACCGAGTCTGAATGGTATCATATGCCCTGCACCTAG 753 0.4303 MSECLSSTIYKAYFGDDPLSSKKFEATVTRLHPSSQEFINEAIPWKLGPPTVLLFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSDRPTMRTVVEHLKTIQDLKYSCRFPTPRTGTIIRKRNVQITESEWYHMPCT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun1349g00006 250 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun1349g00006 250 PANTHER OS01G0588500 PROTEIN-RELATED 53 215 - -
Vifaun1349g00006 250 SUPERFAMILY Protein kinase-like (PK-like) 53 213 IPR011009 -
Vifaun1349g00006 250 Gene3D Transferase(Phosphotransferase) domain 1 51 223 - -
Vifaun1349g00006 250 Pfam Protein kinase domain 54 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun1349g00006 43 211 Glycoside Hydrolase AT3G07070 39.306 2.13e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vifaun1349g00006 Pkinase 2.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun1349g00006 - - jre:108990016 350.903