Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun1349g00002 ATGAAACGCAGATTTCTCGACACGGAGATGAGTATTCCACCATCATACCAAAACAACACAAGCGATTCATTCATCAACGCAGAGAATTTCGATACAAACATGGTGATTATACTAGCAGCACTACTATGCGCATTAATCTGTGCTTTAGGGCTGAACACCATAGCTCGGTGTGCCATGCGATGTAGCAGAAGATTCTCGGAAGAAACACGGGCACAAGCAACAGCAAGGTTGAACAAAACAGGTCTGAAAAAGTGTGAGCTGAGTCAAATTCCGGTAGCTGTTTACGGTACCGGAGAGAATATTCCGGCGACGGAGTGTCCCATTTGTCTTGGAGAATTCGAGAAAGAAGACAAAGTTCGAATGCTGCCAAAGTGTAACCACGGGTTTCATGTTAGGTGTATTGACACGTGGTTGGTGTCGCATTCTTCTTGTCCTAATTGTCGAAATTCACTGCTTGAGAAAGAATCGAAGAGTGTTTGTTCTTCTTCTACCGAGGTTGCCGGAGATGGGTTGCCGGAAAATGGTACGGTGGTTGTTGAGATGCAGGGAAGTTGA 555 0.4523 MKRRFLDTEMSIPPSYQNNTSDSFINAENFDTNMVIILAALLCALICALGLNTIARCAMRCSRRFSEETRAQATARLNKTGLKKCELSQIPVAVYGTGENIPATECPICLGEFEKEDKVRMLPKCNHGFHVRCIDTWLVSHSSCPNCRNSLLEKESKSVCSSSTEVAGDGLPENGTVVVEMQGS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun1349g00002 184 Pfam Ring finger domain 105 148 IPR001841 -
Vifaun1349g00002 184 SMART ring_2 106 147 IPR001841 -
Vifaun1349g00002 184 PANTHER RING-H2 FINGER PROTEIN ATL78 11 163 IPR044602 GO:0016567|GO:0016740
Vifaun1349g00002 184 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vifaun1349g00002 184 CDD RING-H2_EL5-like 105 148 - -
Vifaun1349g00002 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 153 IPR013083 -
Vifaun1349g00002 184 SUPERFAMILY RING/U-box 89 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun1349g00002 1 155 C3H Transcription Factor Family AT3G10910 55.488 1.72e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun1349g00002 K19040 - gmx:100814602 243.047