Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun13446g00001 ATGGATCAGGTAACAAGCAAGGGTAGTGGTGAAATGTTGGATCATGTTGAGAAAGGGGTTAATGAGAGTTTGAGTCATTTAGTTGAAGGAGTTGCAACTGATGCAGGAGCTGGACATAGCTTGGGTGGTAGGGTTAGTTTATGCGGTGAAGATCGGAATTCAGAAGAGTTGTGCAATGATCTTGGGCTGAATGAGGAGCTAAAGGAGAGACCTTTAGAAGTTAAGGATCGGAATCCAAACTTTGGTGGTGATCCTGGAAAAATCAACGATGGATTGCGCGGGGTTGATCAAGGGACTAGTTATAATTCACGTGATTTGGTTAATGGAGAAGCACTTGAGACCCGTGTTGTAATAGATTCTTCCACTCAGGTTGAGTCTGGCGATGGAGATAGCAGAAAATTAGAAGCTAAAACTAATGAATCAAGGTTGAACAAGCTATCAATTAAAGCGACGAAAGGTGTGTCTGAGACTGATAAAAATTCGTGTGTGATTGATGTGAATTGTGGCAGCGGCAAAGATTTTAGTGAGAATTTGGATGGGGAAACGATTTGTAGGATTTGCCATCTTGCATCTGGGCAACCATTAGAAGAAACTGCTGTTGGAACTCCAAATAGTGCTGATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAATCTGAGCTAGGAATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATATGTGGTGAGACTGCAAAGAATGTTCCCGATGTTATTAATAATGGATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGACAGTGGCAGCACTAGCAACTCACCCCGTGGATTGGTTGGATGCTGGCGCGGGCAACCATTCTGCAACTTCTTGATGGCGTGCCTTGTAATAGGTTTTGTTCTACCATGGTTCTTTCGTGTAAAAATGTTCTAG 948 0.4251 MDQVTSKGSGEMLDHVEKGVNESLSHLVEGVATDAGAGHSLGGRVSLCGEDRNSEELCNDLGLNEELKERPLEVKDRNPNFGGDPGKINDGLRGVDQGTSYNSRDLVNGEALETRVVIDSSTQVESGDGDSRKLEAKTNESRLNKLSIKATKGVSETDKNSCVIDVNCGSGKDFSENLDGETICRICHLASGQPLEETAVGTPNSADDKTGLIMLGCACKSELGIAHSHCAEAWFKIKGNRLCEICGETAKNVPDVINNGFMEEWCESGFIDSGSTSNSPRGLVGCWRGQPFCNFLMACLVIGFVLPWFFRVKMF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun13446g00001 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 255 IPR013083 -
Vifaun13446g00001 315 PANTHER ZINC FINGER, RING-CH-TYPE 76 315 - -
Vifaun13446g00001 315 SMART ringv_2 183 247 IPR011016 GO:0008270
Vifaun13446g00001 315 MobiDBLite consensus disorder prediction 74 95 - -
Vifaun13446g00001 315 Pfam RING-variant domain 204 246 IPR011016 GO:0008270
Vifaun13446g00001 315 SUPERFAMILY RING/U-box 181 249 - -
Vifaun13446g00001 315 ProSiteProfiles Zinc finger RING-CH-type profile. 176 253 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun13446g00001 112 314 C3H Transcription Factor Family AT5G05830 34.286 6.98e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun13446g00001 - - gmx:100791129 438.343