Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun12615g00002 ATGGCTACTGCTGCTGCAGGCGTAGCCTCCTTGTTTTCATCTTCCATCAACACTGTCAAATCTTCACGTTCCTCAAACCGCATGTTTGCATCTGTTGTTATACCACAATCCTCAGTTGAACCTTTGTGCATTGGTACAACAATCTCATCACAAAAGTTATGGATGCCTAGATTTTATGTTGCTGTTGCTCAGGAAGAGGCTGTTGTGGCTGTTGATGATGAAGAGAAGGTTGTGGTAGAGGAGGAAGAAAAAGAAAATGAAGAAGAACAAGGAGAGAAGGAGAATGGAGAGGAGAACGGAGAGGAGATTGTAGCAGAAGAAGACACTAGGACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCAAAACTTGCAGGGTTAATTGAGGAATATGGTAGCGCAGAACTAGTTGAGGTTCTTTACGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGCCACCATGACTTGCGTTGAAGATTGTAAAGCAGTAATTGAAAATCTTGATGGAAAAGAGTTCATGGGGCGAACCTTGCGAGTGAATTTCTCAGACAAACCGAAGCCAAAAGAATCGTTGTACCCTGAAACCGAATACAAGCTCTTTATTGGGAACTTGTCTTGGAAAGTAACTTCTGAGATTCTGACAGAAGCCTTTCAAGAGCATGGAACTGTGGTTGGAGCTCGGGTGATATATGATGGCGAAACTGGAAATTCTCGTGGCTATGGCTTTGTTTCCTATGCCAATAAATCAGAAATGGAAGCTGCCCTTACAATCATGAATGATGTGGAACTAGAAGGACGGGCATTGCGCGTAAGTTTGGCTCAAGGAAAACGCTAG 849 0.4287 MATAAAGVASLFSSSINTVKSSRSSNRMFASVVIPQSSVEPLCIGTTISSQKLWMPRFYVAVAQEEAVVAVDDEEKVVVEEEEKENEEEQGEKENGEENGEEIVAEEDTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKAVIENLDGKEFMGRTLRVNFSDKPKPKESLYPETEYKLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVELEGRALRVSLAQGKR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun12615g00002 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Vifaun12615g00002 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Vifaun12615g00002 282 SUPERFAMILY RNA-binding domain, RBD 198 281 IPR035979 GO:0003676
Vifaun12615g00002 282 SUPERFAMILY RNA-binding domain, RBD 103 193 IPR035979 GO:0003676
Vifaun12615g00002 282 PANTHER OS02G0815200 PROTEIN 31 281 - -
Vifaun12615g00002 282 Coils Coil 70 99 - -
Vifaun12615g00002 282 CDD RRM2_NsCP33_like 203 278 - -
Vifaun12615g00002 282 MobiDBLite consensus disorder prediction 76 103 - -
Vifaun12615g00002 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Vifaun12615g00002 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 274 IPR000504 GO:0003723
Vifaun12615g00002 282 Gene3D - 193 282 IPR012677 -
Vifaun12615g00002 282 Gene3D - 61 192 IPR012677 -
Vifaun12615g00002 282 FunFam 28 kDa ribonucleoprotein, chloroplastic 193 282 - -
Vifaun12615g00002 282 SMART rrm1_1 112 185 IPR000504 GO:0003723
Vifaun12615g00002 282 SMART rrm1_1 203 276 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun12615g00002 111 281 Eukaryotic Initiation Factors Gene Family AT4G34110 29.570 1.29e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun12615g00002 - - gmx:100820203 346.665