Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun10534g00001 ATGGGTGACACCAATACCGAAAGCAGCGATTTCACCTCCGAAGACGAAGGCACAGAAGATTACCGACGCGGCGGCTACCACGCCGTCCGAATCGGCGATACTTTCAACTCCGGTCGGTATGTCGTTCAGAGTAAGCTTGGTTGGGGCCACTTCTCTACTGTCTGGCTCGCTTGGGATACTAATCATTCTAGATATGTGGCTTTGAAAGTTCAAAAAAGTGCTCAGCATTACACCGAGGCTGCCCTAGATGAGATAACTATTTTGCAACAGATTGCGGAGGGAGACAAGGATGATCAAAAATGTGTAGTTAAGCTTTTGGACCATTTCAAGCATTTTGGTCCAAATGGACAGCATGTTTGTATGGTTTTTGAGTACCTTGGGGATAACCTCTTAACTCTTATTAAGTATAGTGATTATCGTGGAATGCCTATCAACATGGTTAAAGAGATATGCTATCATATTTTGGTTGGGTTGGATTACTTACATAAGCAGCTTTCTATCATACATACTGACTTGAAACCCGAAAATATCCTTCTTTTATCAATGATAGATCCGTCTAAGGATCCTAGAAAGTCTGGTGCTCCACTTATTCTTCCTAATAGTAAAGATAAAACGCTAGAGTCAACGGTTTTGAGAGACACAAAAACATCAAATGGAGATTTGTTTAAGAATCATAAGAAAAATATTAAGAGAAAGGCTAAGCAAGCAGCTCATGGATGTGCTGAGAAGGAAGCATCTGAAGGAGTTGATGGTAATCCTGAAACCTCTGGTGCTGTAGAATCATCTCCCAATGCAAGTAATGCAAGAGAACAAACTTCTAGTTCTGCTGGCACTAGTAAGATATCAGATGCTGATGAAGCGAAGTCAAAAGAGCAGGGCAACAGAAGAGGAAGCAGACAGAAACTGCTTGCCTCTGTTGATAACAAATGCAAGTTAGTTGACTTCGATCTTTGGTCGTTTGCTTGCATATGTTTTGAGCTTGCAACTGGAGACGTGTTATTTGATCCTCATAGTGGTGACAACTTTGATAGGGATGAGCAGAGGTCTGCATGGAATCAATGGCTCAATCCTGCTTTAGCTCAGTCTATAGCACCAAGTGGATATAATCCAAGTGGATATAATCAGTGGATTCCAAGGTCCAATGTTCCCACTCCTATGCAGAATCCATGA 1170 0.4188 MGDTNTESSDFTSEDEGTEDYRRGGYHAVRIGDTFNSGRYVVQSKLGWGHFSTVWLAWDTNHSRYVALKVQKSAQHYTEAALDEITILQQIAEGDKDDQKCVVKLLDHFKHFGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPINMVKEICYHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAPLILPNSKDKTLESTVLRDTKTSNGDLFKNHKKNIKRKAKQAAHGCAEKEASEGVDGNPETSGAVESSPNASNAREQTSSSAGTSKISDADEAKSKEQGNRRGSRQKLLASVDNKCKLVDFDLWSFACICFELATGDVLFDPHSGDNFDRDEQRSAWNQWLNPALAQSIAPSGYNPSGYNQWIPRSNVPTPMQNP 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun10534g00001 389 MobiDBLite consensus disorder prediction 1 20 - -
Vifaun10534g00001 389 Gene3D Transferase(Phosphotransferase) domain 1 94 185 - -
Vifaun10534g00001 389 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 316 369 - -
Vifaun10534g00001 389 MobiDBLite consensus disorder prediction 255 282 - -
Vifaun10534g00001 389 Gene3D Transferase(Phosphotransferase) domain 1 315 350 - -
Vifaun10534g00001 389 SMART serkin_6 40 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun10534g00001 389 ProSiteProfiles Protein kinase domain profile. 40 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun10534g00001 389 SUPERFAMILY Protein kinase-like (PK-like) 35 343 IPR011009 -
Vifaun10534g00001 389 MobiDBLite consensus disorder prediction 235 249 - -
Vifaun10534g00001 389 MobiDBLite consensus disorder prediction 283 297 - -
Vifaun10534g00001 389 MobiDBLite consensus disorder prediction 207 300 - -
Vifaun10534g00001 389 Pfam Protein kinase domain 40 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun10534g00001 389 FunFam CMGC/SRPK protein kinase 26 125 - -
Vifaun10534g00001 389 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Vifaun10534g00001 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vifaun10534g00001 389 Gene3D Phosphorylase Kinase; domain 1 26 125 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun10534g00001 2 367 EF-hand Containing Proteins AT5G22840 57.072 1.62e-157 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vifaun10534g00001 Pkinase 1.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun10534g00001 K08832 - gmx:100803070 593.964