Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifaun10207g00001 ATGGATCAGCTGGCCTGGTGTGGAAATGTGAACGCATTTCTACGGAATTATAAAATGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAAGTGAAAATTGCAGAGCATGTATTGACCGGTCATAAAGTCGCCATAAAGATTCTTAACCGTCGCAAGATAAAGAACATGGAAATGGAAGAGAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCATCACATTATCCGCCTTTATGAGGTGGTGGAAACCCCAACAGACATATATGTGGTGATGGAATATGTGAAATCTGGAGAGCTCTTCGATTACATCGTAGAAAAGGGTAGGTTGCAAGAAGATGAAGCCCGCAGTTTCTTTCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTAGTTCATAGAGACCTGAAACCTGAGAATCTACTTTTGGACTCAAAGTGGAGTGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGCCACTTTCTCAAGACAAGTTGTGGAAGCCCTAACTATGCTGCTCCAGAGGTTATCTCTGGGAAATTATATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATACGCACTTCTCTGTGGCACTCTTCCTTTTGATGATGAGAATATCCCCAACCTCTTTAAAAAAATAAAGGGTGGGATATATACTCTTCCCAGTCATCTATCTCCTGGTGCCAGAGATTTGATACCAAGGCTGCTTGTGGTGGATCCCATGAAAAGGATTACCATACCCGAGATACGCCAACACCAATGGTTCCAACTTCGTCTGCCGCGTTATTTGGCGGTGCCACCACCGGATACACTTCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAGGAGGTGGTTAATAGGGGATTTGACAGGGATCAATTGGTTGAGTCCCTTAGCAACAGAGTGCAAAATGAGGGTACTGTAACTTACTATTTGTTATTGGACAACCGTTATCGTGTTTCCACCGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATCCTGGTTTGAACCGTATCAACTCTGGTGAAGTTGTTTCTCCAGCTGGTGGGCACCACTTTTTAGCGTATCAGGGGGTAGGAATGAGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGAGAAATAATGGTCGAGGTCCTTAAAGCTCTGCAAGGACTGAATGTCTGTTGGAAAAAAATTGGACACTATAATATGAAGTGCAGATGGGTTGTTGGAATCCCTGGTCATCAGGGAGGAATGGTGAACAATTCTGTGCTTAATAATAATTTCCTTGGAAATGTTGGTATTATTGAGAATGAAGCTGTTCCAAAATCAAGTGTAGTCAAGTTTGAACTGCAGCTGTACAAAACTCAGGAGAAATATCTCCTTGATCTTCAAAGGGTGGAGGGTCCGCAGTTTCTTTTCTTGGATCTTTGTGCTGCCTTCCTTGCGCAGCTTCGTGTTCTTTAA 1524 0.4344 MDQLAWCGNVNAFLRNYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHHHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRITIPEIRQHQWFQLRLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFDRDQLVESLSNRVQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDPGLNRINSGEVVSPAGGHHFLAYQGVGMRQQFPAERKWALGLQSRAQPREIMVEVLKALQGLNVCWKKIGHYNMKCRWVVGIPGHQGGMVNNSVLNNNFLGNVGIIENEAVPKSSVVKFELQLYKTQEKYLLDLQRVEGPQFLFLDLCAAFLAQLRVL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifaun10207g00001 507 Gene3D Kinase associated domain 1, KA1 390 505 - -
Vifaun10207g00001 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vifaun10207g00001 507 FunFam Non-specific serine/threonine protein kinase 8 347 - -
Vifaun10207g00001 507 ProSiteProfiles Protein kinase domain profile. 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun10207g00001 507 SUPERFAMILY KA1-like 326 506 IPR028375 -
Vifaun10207g00001 507 Pfam UBA/TS-N domain 291 327 IPR015940 -
Vifaun10207g00001 507 Pfam Kinase associated domain 1 465 506 IPR001772 -
Vifaun10207g00001 507 FunFam Non-specific serine/threonine protein kinase 3 98 - -
Vifaun10207g00001 507 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Vifaun10207g00001 507 SMART serkin_6 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun10207g00001 507 Gene3D Transferase(Phosphotransferase) domain 1 8 346 - -
Vifaun10207g00001 507 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 290 330 IPR015940 -
Vifaun10207g00001 507 CDD UBA_SnRK1_plant 291 331 - -
Vifaun10207g00001 507 CDD AMPKA_C 384 504 - -
Vifaun10207g00001 507 Pfam Protein kinase domain 17 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifaun10207g00001 507 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 459 506 IPR001772 -
Vifaun10207g00001 507 SUPERFAMILY Protein kinase-like (PK-like) 14 281 IPR011009 -
Vifaun10207g00001 507 FunFam Non-specific serine/threonine protein kinase 390 505 - -
Vifaun10207g00001 507 CDD STKc_AMPK_alpha 14 269 - -
Vifaun10207g00001 507 PANTHER SERINE/THREONINE KINASE 16 334 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifaun10207g00001 17 269 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 5.66e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vifaun10207g00001 Pkinase 4.2e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifaun10207g00001 K07198 - gmx:547544 885.174