Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04195 ATGTTAGAACAAACTCCAACTTCAACAAGCGCATCTACGACTACTGTATACTTGAACAAACTTCGAGTGCAACAAGTGGAAGGTGCTTCTCTTCTTTTCTCTCACACCCACGACTCAACTACCAATATTCTTCCTCCTTCCCAATCAGTTGCACAAGAATCACTCCCACTTATGAGCTTGCAACGGAGGCCTAGATCATCCTCCAACACCCACCATCACAATGGTCCTTCCAATTCAACAAGGAGTACCCGTCGGGAGGATTCTGATTTAAATTTACCTCAACTGCTGCAAGAGATTCAGGACAAGCTCACCAAAGGCACTGTCGAATGCATGATTTGCTATGACACTGTCTGGAGGTCTGCGCCTATCTGGTCATGCTCCAGTTGCTACTCTATCTTTCACCTCAATTGTACTAACAAGTGGGCTCGTGCACCAACATCATTTGCATCTGCTGACAACACTAATCATTGGCGATGCCCCGGTTGTCAAGCTGTGCAGCAAACCTCATCCAATTCCATTAGGTACTTGTGCTTCTGTGGGAAGAGGTTCGACCCTCCATCCGATTTCTATCTCACCCCGCATTCATGCGGAGAACTGTGCGGGAAGCCTCTTCAGAAGACCGGGGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCTCCTTGCAAAGCATTTGCTCCTCCCCGTCTGTGCCCTTGTGGCAAGATTACTATTACAACTCGCTGTTCTGAACCCCAATCTCTTCTTACATGCGGCCAACAATGTCAAAAGCTTCTTCAATGTGGGCGCCATCGCTGTGAACAAATTTGTCATATTGGTCCATGTGATCCTTGCCGTGTTCCAATGGATGCCTCTTGCTTTTGCAGTAAAACGTCTGAGGCTATTCTTTGTGGGGACATGGCTGTGAAGGGTGAAATCAAAGCAGAAGGTGGAGTTTTTTCTTGTGCTTCCACTTGTGGAAAGAAACTAAGCTGTGGCAATCATGTCTGTATGGAGACCTGTCATCCAGGCAGCTGTGCGGAGTGTGAGTTGTTGCCAGCCCGTGTTAAGATGTGTTGCTGCGGGAAAACTAGATTGAAAGAGGAACGTCAGTCTTGTTTAGACCCAATTCCTACCTGTTCAAAACTATGTGGCAAGTCCCTTGCCTGTGGGATGCATAGTTGTAACGAGACATGTCATGATGGGGATTGCTCTCCTTGTTTGGTTTTAGTCTCCCAGAAGTGTCGGTGTGGCTCAACTTCCAGAATGGTGGAGTGCTATAAGACAACAACGGAGGATGAGAAGTTTACATGTGAAAAGCCTTGTGACAAGAAAAAGAACTGTGGAAGGCATCGGTGTAGTGAACGGTGTTGTCCATTTTCTGATCCAAATAATATTGTAAATGCAGATTGGGATCTACACCTCTGTTCCATTTCATGTGGAAAGAAATTACGCTGTGGGCAGCATGCGTGTGATTCCCTGTGTCACAGTGGTCATTGTCCACCTTGTCTTCAAACTATATTCACTGATTTGGCATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTACCATGTGGTACTCCACTGCCCTCATGTCCGCTTCCATGTTCAGTTCCTCAGCCTTGTGGCCACACAGCCTCCCATAGCTGTCATTATGGAGATTGCCCTCCTTGTTCGGTGCCTGTTGCAAGAGAATGTACTGGCGGACACGTAGTTCTTAGGAACATACCTTGTTCCTCAAAGGATATTCGATGTAATAAGCTCTGCGGGAAGACTAGACAGTGTGGTTTACATGCTTGTGGGAGAACATGTCACTCCGCGCCTTGTGATATTCAGCCTGCTGTGCAAGGTAATCGAACTTCTTGTGGGCAGACATGTGGTGCTCCAAGGAGAGACTGCCGGCATACATGTACTGCTCCTTGTCACCCTTCATCTTCATGTCCAGATAGAAGATGTGAATTCACTGTCACAATCAGTTGTACTTGTGGCCGAATAACAACTAACGTCCCTTGTGATGCTGGTGGTAGTGGTGCTGATGTTATACATGAAACTTCCATTGTTCAAAAGTTGCCTATGCCACTTCAACCATTGGATGAAAATGGCAAAAGAGTTTCCCTGGGACAACGGAAACTGATGTGTAATGATGAGTGTGCTAAGTTGGAGCGTAAAAAGGTACTTGCAAATGCTTTTGAGATTACCGCTCCAAACTTAGATTCTTTCCATTTAGGGGAGATTTCTGTTGCTCAGTCTGAATTACTTGGTGATCTATTGAGGCGTGATAGTAAATGGGTTTTATCCATTGAGGAGAGATGCAAGTATTTAGTACTTGGCAAGAGCAGAGGAACTACACATGGTCTAAAAGCCCATGTTTTCTGTCCCATGCTAAAAGATAAGAGAGATGCAGTGAGGATGATTGCTGAGAGATGGAAGCTTGCAATAAATGCAGCTGGTCGAGAGCCAAAGCAATTTATAGTTGTTCACGTTGTCAAAAAATCAAGAGCTCCATCACGCGTGCTAGGGATTAAGGGTACTACAACCACACATCCTCCTCCTGCATTTGATCCTTTGGTAGACATGGATCCTCGATTTGTCGTCTCTTTTCCTGAATTACCAAGACAAGCAGATATCAGTGCGTTGGTGTTGAGATTTGGTGGTGAGTGCGAACTTGTTTGGTTAGATGACAAAAATGCATTGGCTGTTTTTAATGATCCTGCGCGAGCTGCAGCTGCAATGCGAAGGTTAGATCATGGAAGTGTTTATCAGGGAGCTATTGTGGTTGTTCCAAAGGTAGGGGCATCTGTAGTATCTACCGTTACAAATGCCTGGGGAGGAGCTGGGACAGTGAAAGGAGGGACCCTGGCAGCATGGAAAGGGAATCTCTTGACAAAGGCTATTGTTATAGAACCAAGTTGGAGGGAAGATTCTTGGGATGATGAGGAGGGGGCTACTGGTTCTGCGAATATCCAGTCATCTATTTGGAAGAAAGAAGCACCCATATCTACTTCAGCAAATCCTTGGAGTGTCTTAGATAAAAAGTGGTCTTCAAGTTCATCTGCTGCTGCTTCCGTTAAAGCTGACACTTGCATGAAACAAACGGAGAATAGTGCTATGGCAAAGTTTGAATCTGTTGATGGTGGTTCAAATCTAGAACACCAGCATGGAAAAGCCTTAGACAGTTCAGAAGTTAATGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATGA 3222 0.4559 MLEQTPTSTSASTTTVYLNKLRVQQVEGASLLFSHTHDSTTNILPPSQSVAQESLPLMSLQRRPRSSSNTHHHNGPSNSTRSTRREDSDLNLPQLLQEIQDKLTKGTVECMICYDTVWRSAPIWSCSSCYSIFHLNCTNKWARAPTSFASADNTNHWRCPGCQAVQQTSSNSIRYLCFCGKRFDPPSDFYLTPHSCGELCGKPLQKTGDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKITITTRCSEPQSLLTCGQQCQKLLQCGRHRCEQICHIGPCDPCRVPMDASCFCSKTSEAILCGDMAVKGEIKAEGGVFSCASTCGKKLSCGNHVCMETCHPGSCAECELLPARVKMCCCGKTRLKEERQSCLDPIPTCSKLCGKSLACGMHSCNETCHDGDCSPCLVLVSQKCRCGSTSRMVECYKTTTEDEKFTCEKPCDKKKNCGRHRCSERCCPFSDPNNIVNADWDLHLCSISCGKKLRCGQHACDSLCHSGHCPPCLQTIFTDLACACGKTSIPPPLPCGTPLPSCPLPCSVPQPCGHTASHSCHYGDCPPCSVPVARECTGGHVVLRNIPCSSKDIRCNKLCGKTRQCGLHACGRTCHSAPCDIQPAVQGNRTSCGQTCGAPRRDCRHTCTAPCHPSSSCPDRRCEFTVTISCTCGRITTNVPCDAGGSGADVIHETSIVQKLPMPLQPLDENGKRVSLGQRKLMCNDECAKLERKKVLANAFEITAPNLDSFHLGEISVAQSELLGDLLRRDSKWVLSIEERCKYLVLGKSRGTTHGLKAHVFCPMLKDKRDAVRMIAERWKLAINAAGREPKQFIVVHVVKKSRAPSRVLGIKGTTTTHPPPAFDPLVDMDPRFVVSFPELPRQADISALVLRFGGECELVWLDDKNALAVFNDPARAAAAMRRLDHGSVYQGAIVVVPKVGASVVSTVTNAWGGAGTVKGGTLAAWKGNLLTKAIVIEPSWREDSWDDEEGATGSANIQSSIWKKEAPISTSANPWSVLDKKWSSSSSAAASVKADTCMKQTENSAMAKFESVDGGSNLEHQHGKALDSSEVNDVVDDWEKACE 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04195 1073 CDD NF-X1-zinc-finger 320 363 - -
Vifa6g04195 1073 MobiDBLite consensus disorder prediction 1042 1062 - -
Vifa6g04195 1073 CDD NF-X1-zinc-finger 256 304 - -
Vifa6g04195 1073 CDD NF-X1-zinc-finger 196 249 - -
Vifa6g04195 1073 CDD NF-X1-zinc-finger 531 579 - -
Vifa6g04195 1073 CDD NF-X1-zinc-finger 621 670 - -
Vifa6g04195 1073 Gene3D - 856 921 IPR012677 -
Vifa6g04195 1073 ProSiteProfiles Zinc finger PHD-type profile. 107 165 IPR019787 -
Vifa6g04195 1073 ProSiteProfiles Zinc finger RING-type profile. 110 163 IPR001841 -
Vifa6g04195 1073 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 60 977 IPR034078 GO:0003700
Vifa6g04195 1073 CDD NF-X1-zinc-finger 474 526 - -
Vifa6g04195 1073 CDD NF-X1-zinc-finger 378 426 - -
Vifa6g04195 1073 MobiDBLite consensus disorder prediction 59 77 - -
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 266 284 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 213 228 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 625 647 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 484 501 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 594 609 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 330 347 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 541 558 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 446 457 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 Pfam NF-X1 type zinc finger 388 405 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 541 559 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 330 349 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 484 503 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 594 623 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 446 476 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 388 407 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 266 285 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 211 229 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 SMART znfxneu3 632 653 IPR000967 GO:0005634|GO:0008270
Vifa6g04195 1073 MobiDBLite consensus disorder prediction 59 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04195 Vifa-Chr6 1378184857 1378189311 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vifa6g04195 zf-NF-X1 1.3e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04195 K12236 - gmx:106799700 1598.56