Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04193 ATGGAAATAGTTAAACACAGATCCATGGATCCATTCTTCATCCTCTTACTAATTCTACTCACTGCTCCATCACTACCTCTAGCGGATCTCGATTCCGAACGAGCTGCATTACTAGCTCTCCGCTCCTCCGTCGCCGGCCGAACCCTTTTCTGGAACGCAACCAACCAGACTCCCTGCAACTGGGCCGGCGTCCAATGCCAAGACCACCATGTTGTCGAGCTTCATCTCCCCGGCGTCGCTCTCTCCGGTCAAATACCTACCGGCATATTCTCCAATCTAACTCACCTCCGTACTCTCAGTCTTCGTTTCAATGCTCTCACTGGTTCACTCCCTTCAGATCTCGCTTCCTGTGTCAACCTTCGCAACCTTTATCTTCAACGAAACCTTCTCTCCGGCCAAATCCCTCTCTTTCTCTTCAACTTGCCCGATTTGGTTCGACTCAACATGGGCTTTAACAACTTCTCAGGTCCCATTTCAACTTCCTTCAACAACTTCACCAGACTCAAAACCCTCTACCTTGAAAACAACCGTCTTTCTGGTTCTATACCGGAACTCACTCGTTTGACCCTCGACCAGTTCAATGTCTCTAACAATGTTTTAAACGGTTCTGTTCCTGTTAAGCTTCAGACTTTCCCTCAAGATTCCTTTTTGGGAAATTCTCTATGCGGTCCACCACTTTCTCTTTGCCCTGGAACCGACACAAACGATTCATCTCCTTTCACTACCGACGGAGGTAACACTAGTAAGAAAAAGAATAACTTGTCTGGAGGAGCCATTGCTGGAATTGTCATTGGATCTGTCGTGTTTCTTCTTTTGCTCGTTTTCCTTTTCATCTTCTTATGTAGGAAAAAGAGTAGCAAGACAACCAGTGCTGTTGATGTTGCTGCGGTGAAGCATTCTGAATCTGATGTTCCTCGTGACAAGTCTATTCCCGACATGGAAAACGGCAATGGATATGCCTCATCTACTGCTGCGGCTGCCGCGGCAGTGGTTGCAGTCAACAAGGTTGAAGCAAACGGAAATGGAAACACTGCTGGTGGAGCTAAGAAGTTGATATTTTTTGGGAATGCGCCCAGGGCTTTTGATCTAGAGGATCTGTTGAGGGCATCGGCCGAGGTGTTGGGTAAAGGGACATTCGGGACAGCGTATAAGGCGGTATTGGAGTCAGGGCCGGTGGTGGCGGTGAAAAGGTTGAAGGATGTGACAATAAATGAGAAGGAGTTCAGAGAGAAAATTGAAGCGGTTGGAGCAGTAGATCATCAGAGTTTGGTACCTTTAAGAGCTTACTATTTTAGCAGAGATGAGAAACTTCTTGTTTATGATTACATGTCAATGGGAAGCCTCTCTGCACTTTTACATGGAAACAAAGGAGCGGGTAGGACACCATTGAATTGGGAAATGAGATCAAGCATTGCACTTGGAGCAGCCCAAGGCATTGAGTTCCTTCATTCACAAGGGCCTAATGTTTCCCATGGAAACATAAAGTCGTCTAATATCCTCTTAACCAAATCATATGAAGCAAAAGTGTCTGATTTTGGGCTTGCACAGCTTGTTGGCCCATCCTCTACCCCAAACCGTGTTGCTGGGTACCGTGCACCAGAAGTAACCGATCCTCGCAAAGTATCTCAAAAGGCAGATGTCTACAGTTTTGGCGTATTGCTCTTAGAACTTCTAACCGGGAAGGCACCTACACACGCTCTCCTAAATGAAGAAGGGGTAGACCTCCCAAGATGGGTTCAATCTGTGGTTAGAGAAGAGTGGACTTCTGAGGTGTTTGATCTTGAGCTCCTAAGGTATCAGAATGTTGAAGAGGAGATGGTCCAGTTGCTTCAACTTGCTGTTGATTGTGCAGCACAATACCCTGATAAGCGAACTTCGATGTCTGATGTCGTACGAAGCATAGAAGAATTACGTCGATCTAGCTTGAAAGATGAGCAAGACCAAATCCAACATGACAACAATGATATAGAATTGTAG 1977 0.4618 MEIVKHRSMDPFFILLLILLTAPSLPLADLDSERAALLALRSSVAGRTLFWNATNQTPCNWAGVQCQDHHVVELHLPGVALSGQIPTGIFSNLTHLRTLSLRFNALTGSLPSDLASCVNLRNLYLQRNLLSGQIPLFLFNLPDLVRLNMGFNNFSGPISTSFNNFTRLKTLYLENNRLSGSIPELTRLTLDQFNVSNNVLNGSVPVKLQTFPQDSFLGNSLCGPPLSLCPGTDTNDSSPFTTDGGNTSKKKNNLSGGAIAGIVIGSVVFLLLLVFLFIFLCRKKSSKTTSAVDVAAVKHSESDVPRDKSIPDMENGNGYASSTAAAAAAVVAVNKVEANGNGNTAGGAKKLIFFGNAPRAFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTINEKEFREKIEAVGAVDHQSLVPLRAYYFSRDEKLLVYDYMSMGSLSALLHGNKGAGRTPLNWEMRSSIALGAAQGIEFLHSQGPNVSHGNIKSSNILLTKSYEAKVSDFGLAQLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRTSMSDVVRSIEELRRSSLKDEQDQIQHDNNDIEL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04193 658 ProSiteProfiles Protein kinase domain profile. 368 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04193 658 Gene3D Transferase(Phosphotransferase) domain 1 443 657 - -
Vifa6g04193 658 Gene3D Ribonuclease Inhibitor 143 229 IPR032675 -
Vifa6g04193 658 SUPERFAMILY L domain-like 47 208 - -
Vifa6g04193 658 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Vifa6g04193 658 Pfam Protein kinase domain 371 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04193 658 CDD STKc_IRAK 374 637 - -
Vifa6g04193 658 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Vifa6g04193 658 FunFam Probable inactive receptor kinase RLK902 30 186 - -
Vifa6g04193 658 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Vifa6g04193 658 Pfam Leucine rich repeat 84 130 IPR001611 GO:0005515
Vifa6g04193 658 FunFam pollen receptor-like kinase 1 337 442 - -
Vifa6g04193 658 Gene3D Phosphorylase Kinase; domain 1 335 442 - -
Vifa6g04193 658 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515
Vifa6g04193 658 FunFam Probable inactive receptor kinase At1g48480 443 646 - -
Vifa6g04193 658 PANTHER OS05G0588300 PROTEIN 13 641 - -
Vifa6g04193 658 SUPERFAMILY Protein kinase-like (PK-like) 372 634 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04193 Vifa-Chr6 1377869346 1377871700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04193 29 648 Receptor kinase-like Gene Family AT1G48480 63.766 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa6g04193 Pkinase 1.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04193 - - gmx:100818955 964.911