Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04192 ATGGCGAGACTAGAGAGAGATGGCACAAATAAAAGTCTAGAGAGTCTAATGGACTCCCATAAACCAGGAACCACTACAAATGTGAACCAGCTGACTTCCCAGAAGTCCATTCCTGGCTATGGCCTCGAATTCACTAACCTCTCGTACAGTATCATAAAGAAACAGAAAAAGGATGGAGTTTGGATCAACAAAGAAACATTTCTTCTTCATGATATCTCTGGCCAGGCAGTTAAAGGTGAAATTTTGGCAATCATGGGGCCTAGTGGTGCTGGAAAATCTACTTTTCTTGATGCTTTGGCTGGACGAATCGCTAAGGGGAGTCTAGAAGGATCGGTTAGAATTGATGGAAAGCCGGTAACCACAAGCTACATGAAAAGGGTGTCATCGTATGTGATGCAAGATGACCAGCTCTTCCCTATGTTAACAGTTTTTGAAACATTTATGTTTGCTGCGGAAGTTAGGCTTCCTCCTTCTATTTCCAGGGATGAAAAGAAGAAAAGGGTGCATGAGCTTCTTGATAAACTGGGCTTACAGAGTGCTACACATACCTATATTGGCGACGAAGGAAGGAGAGGAGTGTCGGGAGGGGAACGAAGAAGGGTATCTATCGGCATAGAGATCATTCATAAGCCGTCGCTTCTGTTTCTGGACGAACCTACCTCGGGTCTGGATTCTACAAGTGCTTACAGTGTAGTTGAAAAGATTAAAGACATAGCTCAGGGTGGTAGCATTGTTCTCATGACCATACATCAGCCTTCATTTCGAATTCAAATGCTCCTCGACAAGATCGCTGTCCTCGCAAGGGGAAGATTGATATACATGGGAAGGCCAGATGCACTTCCGACTCACCTATCTGGATTTGGAAGGCCTGTGCCTGATGGAGAAAACAGTATTGAATATCTTTTAGATGTTATAACTGAATATGATCAAGCAACTGTTGGACTTGACCCTCTTGTCCAATACCAAAATGATGGCCATAAGCCTGACCTAGCAGCCATGACCCCTGTTCCAAAACCTCCACATTACAGAAGGAACACCCCAGCATCAAAACACATGATTAGCCTGCGCAGCCAAGGATTCACTGCTGGCACACCACAACCTGAATCTTCACAGTTTGGTCTTGATGATGAGGACGATGATGATGACGAGAATTTTGATAACTCTCTTGAAAGGAGAAGTGTTAAAACATCAAGGAACATAACAACCAGTGGTGTTTATCCACGCTTAGCTTCTCAGTTCTACCAAGATTTCTCAGCCAAAGATTTTTCGGTCTGGATTTACAACGGTGTAGTAGGAACCCCGCGTCGCCCACCATCATGGACTCCGGCAAGAACTCCGGGATGGACACCTGGGAAAACACCCTTATCAGGACCAAGAAGTTTTGTTTCCAACCAACATTCTGTATCTTATCAGGAACCTTATTATCACCAAAAAGCGCAGACGGATGTTAGCCAGTCTATGGAGTACTCTGCAACATCATACGCACCTTCATATGAAGAGTTTGAGATTGAGGAAGTGCTTGATGAACCGGACCTTGGACCCAAGTATGCAAACCCATGGTTTCGTGAGGTTGCAGTGCTCTCATGGAGAACGCTACTCAATGTAATTCGGACTCCAGAACTCTTTGCCTCCCGTGAGATTGTGCTGACTGTTATGGCACTTGTCTTATCCACCATTTTCAGTAACCTGGGTGATACTACTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTTGCAGTGTGCCTTGTTTTCTTTTCTTCCAATGATGCAGTCCCATCTTTTATCAATGAAAGGTTCATCTTCATCAGGGAAACATCCCACAATGCTTACCGTGCTTCTTCATATGTAATGTCTTCCCTCATTGTTTACCTACCATTTTTTGCTGTTCAAGGCCTCACATTTGCTGTCATAACCAAATTAATGCTCCACTTGAAAAGCAGTTTATTCAATTTCTGGATGATACTTTTTGCCTCCCTCATTACTACCAATGCATATGTGATGCTTGTTAGCGCTCTTGTGCCTAGTTACATCACAGGTTATGCCGTAGTCATTGCCACAACAGCGCTCTTCTTTTTGACCTGTGGTTTCTTCCTCAAGAGAACTCAGATACCCAGATACTGGACGTGGCTTCACTATATTTCTGCAATCAAATACCCATTTGAGGGATTGCTGATAAATGAATTCAAGAACGATCGTGGTTGCTATACAGGAAACAAAAGAGATTTATCCCCAGGACCTTTAGGAGATGTGAAGCCCAGTAAACACCACAATGCCAGTCTTCCCCTTAACTGCTTATTAGGAGAAGATGTCTTGTCCACAATGGATATTACAATGGAAAACCTATGGTATGACATCTTAATCCTACTAGCTTGGGGTGTTCTATACAGGTTCTTCTTCTACTTGGTTTTGAGATTCTACTCCAAAAACGAAAGAAAATGA 2445 0.4323 MARLERDGTNKSLESLMDSHKPGTTTNVNQLTSQKSIPGYGLEFTNLSYSIIKKQKKDGVWINKETFLLHDISGQAVKGEILAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVTTSYMKRVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVHELLDKLGLQSATHTYIGDEGRRGVSGGERRRVSIGIEIIHKPSLLFLDEPTSGLDSTSAYSVVEKIKDIAQGGSIVLMTIHQPSFRIQMLLDKIAVLARGRLIYMGRPDALPTHLSGFGRPVPDGENSIEYLLDVITEYDQATVGLDPLVQYQNDGHKPDLAAMTPVPKPPHYRRNTPASKHMISLRSQGFTAGTPQPESSQFGLDDEDDDDDENFDNSLERRSVKTSRNITTSGVYPRLASQFYQDFSAKDFSVWIYNGVVGTPRRPPSWTPARTPGWTPGKTPLSGPRSFVSNQHSVSYQEPYYHQKAQTDVSQSMEYSATSYAPSYEEFEIEEVLDEPDLGPKYANPWFREVAVLSWRTLLNVIRTPELFASREIVLTVMALVLSTIFSNLGDTTFKDINRLLNFYIFAVCLVFFSSNDAVPSFINERFIFIRETSHNAYRASSYVMSSLIVYLPFFAVQGLTFAVITKLMLHLKSSLFNFWMILFASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPRYWTWLHYISAIKYPFEGLLINEFKNDRGCYTGNKRDLSPGPLGDVKPSKHHNASLPLNCLLGEDVLSTMDITMENLWYDILILLAWGVLYRFFFYLVLRFYSKNERK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04192 814 MobiDBLite consensus disorder prediction 359 392 - -
Vifa6g04192 814 MobiDBLite consensus disorder prediction 326 346 - -
Vifa6g04192 814 Pfam ABC-2 type transporter 524 730 IPR013525 GO:0016020|GO:0140359
Vifa6g04192 814 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 801 - -
Vifa6g04192 814 MobiDBLite consensus disorder prediction 436 455 - -
Vifa6g04192 814 CDD ABCG_EPDR 42 275 - -
Vifa6g04192 814 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 293 IPR003439 GO:0005524
Vifa6g04192 814 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Vifa6g04192 814 Gene3D - 42 286 IPR027417 -
Vifa6g04192 814 MobiDBLite consensus disorder prediction 1 31 - -
Vifa6g04192 814 MobiDBLite consensus disorder prediction 15 31 - -
Vifa6g04192 814 SMART AAA_5 78 278 IPR003593 GO:0016887
Vifa6g04192 814 FunFam ABC transporter G family member 6 57 284 - -
Vifa6g04192 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 283 IPR027417 -
Vifa6g04192 814 Pfam ABC transporter 69 221 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04192 Vifa-Chr6 1377464715 1377467561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04192 20 359 Calmodulin-binding Proteins AT2G36910 22.741 5.44e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04192 K05681 - gmx:100819497 1294.26