Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04183 ATGTCTTCTGTCTTAGAACACTTGTTGGATGTGGAAGAACATCAGCAACAACATGTAGACTTCACCAAACCCAAATTCCAGATAAAAAATCTGACAAAAGACTCAGATGATGGAAAAACTCACATACTCAAAGGCATCACCGTTGACGTTCCAAAGGGTGTGGTTGTTGGGATCATAGGCCCTAGTGGTAGCGGCAAGTCAACGCTCTTAAGGGCTTTGAATCGCCTCTGGGAGCCACCTTCCTCCTCCGTCTTCCTCGATGGGCAAGATATCTGCCACCTTGATGTTCTTTCCCTCCGCCGTAAGGTTGCCATGCTCTTTCAGCTCCCTGCTCTCTTTGAAGGGACAGTTGCGGACAACGTTAGATATGGTCCACAACTGAGGGGAGTAAAGCTAACAGACGATGAGGTGGGGAAGTTGCTGACAATGGCGGATCTGGATGCTTCTTTCATGGATAAATCTGGTGCTGACCTCTCTGTAGGTCAGGCTCAAAGAGTTGCACTTGCAAGAACTCTAGCTAACTCACCTGAGGTTTTGCTGTTGGATGAACCTACTAGTGCATTAGATCCAATATCGACGGAAAACATAGAAGATGCTTTGATGAAGTTGAACAAGAATAAAGGCATGACACTAATCATGGTTTCTCATAGCATCAAACAAATTCAAAGGATGGCTGATGTAGTGTGTTTGGTTGTTGATGGTGAAATTGTTGAAGTTCTTAAGCCTAATCAACTCTCTCAAGCTAAGCATCCAATGGCGAGAAGGTTTCTTGAACTAAGTTCTTAA 786 0.4453 MSSVLEHLLDVEEHQQQHVDFTKPKFQIKNLTKDSDDGKTHILKGITVDVPKGVVVGIIGPSGSGKSTLLRALNRLWEPPSSSVFLDGQDICHLDVLSLRRKVAMLFQLPALFEGTVADNVRYGPQLRGVKLTDDEVGKLLTMADLDASFMDKSGADLSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEDALMKLNKNKGMTLIMVSHSIKQIQRMADVVCLVVDGEIVEVLKPNQLSQAKHPMARRFLELSS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04183 261 Pfam ABC transporter 43 186 IPR003439 GO:0005524
Vifa6g04183 261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 258 IPR003439 GO:0005524
Vifa6g04183 261 ProSitePatterns ABC transporters family signature. 158 172 IPR017871 GO:0005524|GO:0016887
Vifa6g04183 261 FunFam ABC transporter, ATP-binding protein 23 256 - -
Vifa6g04183 261 Gene3D - 23 260 IPR027417 -
Vifa6g04183 261 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 4 260 IPR005670 GO:0005315|GO:0016020|GO:0035435
Vifa6g04183 261 SMART AAA_5 52 242 IPR003593 GO:0016887
Vifa6g04183 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 248 IPR027417 -
Vifa6g04183 261 CDD ABC_PstB_phosphate_transporter 26 245 IPR005670 GO:0005315|GO:0016020|GO:0035435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04183 Vifa-Chr6 1374509787 1374510936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04183 42 245 Calmodulin-binding Proteins AT2G36910 33.333 4.34e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04183 K02068 - gmx:100791365 369.392