Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04175 ATGGATGACCTTCTCGGCCTTTTAAGGATTCGCATCAAGCGTGGTGTCAACCTCGCCGTTCGTGATGTTAATACAAGTGATCCATACATTGTTGTTAAGATGGGAAAGCAGAAACTCAAGACTCATGTGATTAAAAAGGATATCAATCCTGAATGGAATGAAGATCTTACACTTTCTATCACCGAACCTATTCTTCCATTCAAACTAACTGTGTATGATTATGACACATTTAGCAAAGATGACAACATGGGAGATGCTGAAATGGATATTTCACCATATATAGAGGCATTGAAGATGAACATTGAAGATATTCCAAATGGTACTATAATCACCAGAATACAACCATGCAGGACAAATTGTTTGGCAGAAGAGAGTTGCATCACATATCAAGATGGACATATTGTCCAAGATGTTGCTCTTAGATTGCGACACGTCGAATGTGGTGAAGTCGAAATTCAATTGCAATGGATCGCTCTTCCTGGTTCCAAGGGTTTATAA 498 0.3876 MDDLLGLLRIRIKRGVNLAVRDVNTSDPYIVVKMGKQKLKTHVIKKDINPEWNEDLTLSITEPILPFKLTVYDYDTFSKDDNMGDAEMDISPYIEALKMNIEDIPNGTIITRIQPCRTNCLAEESCITYQDGHIVQDVALRLRHVECGEVEIQLQWIALPGSKGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04175 165 CDD C2_ArfGAP 5 148 - -
Vifa6g04175 165 SMART C2_3c 7 102 IPR000008 -
Vifa6g04175 165 Pfam C2 domain 6 92 IPR000008 -
Vifa6g04175 165 PRINTS C2 domain signature 22 34 IPR000008 -
Vifa6g04175 165 PRINTS C2 domain signature 67 75 IPR000008 -
Vifa6g04175 165 PRINTS C2 domain signature 46 59 IPR000008 -
Vifa6g04175 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Vifa6g04175 165 Gene3D C2 domain 3 163 IPR035892 -
Vifa6g04175 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vifa6g04175 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 100 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04175 Vifa-Chr6 1371492151 1371492900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04175 38 165 C2H2 Transcription Factor Family AT1G70790 56.154 1.04e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04175 - - gmx:100799469 278.485