Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04166 ATGGCTAAGAGATCAGATTTTGCACAGAAGCTTCTCGATGATCTGCGCCTAAGGAAAGAACGAATCACTGCTACTACATCACATTCCAACAACTCTAACCAATCCCACCATTTACCTATAGATGCATATGCATACACCAAGCAAACCTACAGAGGGTCCACAAACACTAGAGCAAATGAAATTGTTAGTTCCAGATGTGGGGAGATGGGGAATAGGTCTAGCAGAGGGCAAAGGTCATTAAAGAGTGGAGGAGACTTGTCAAATCAGATTATTCCATACGAGAAAGCCTTTCAGAGTAATGGAGGGAAACCAAGGAGGGCCGATTTGTCTTTCACCAACTCAATTCTGGGTTTCCTTCACCAAATTCAAAGGGGAACAATGGATAGAGGAAGCAACTTGGACAGGCAACTAGCTCCAACTAGCCGCACCCTCTCCCTTGTGCAGATAAATGAGATATCCAAAGGTGCACAAAAACTAAACCACATATTGAGAGCTTGTTGCTCTAATGGCGTTAACATGGATACATATTCATTACATTTTGCAAAGGAACTGTTACAAGGAGCTATTGATTTGGAAGAGTCCCTTGGGATGCTCGTAGACCTGCAAAAAAATTCAGAGTTTATGATGACCTCTCAAGCGCAGAACAAAAACCGAATCACACTACTAGAAGAAGAGGAGGAGGAGGATGATAATGTAGAGGATCAGAGGTGGAGGATGGAGAAAATGCAACTGGCACGTCCAACTTTCTCATTTGACAACAAGATGCAGAGAGCAATTACCATTAGCAACTCTAAGGAAGCCAGAAAGATAAAAGTTTCTCAGCAGAAGCGATTATCAGCTAACACTGTTGGAACTGCTGATATGTCAAACCAGACGGTAGACAAGGGAAGGATTCCAAACGTAATAGCCAAATTAATGGGGCTTGACAACCTTCCTGAGAAAAAAGATTCAGGTAATAGTAATACTGCATCATCCAAGCACTCTGCCAAAGGAAGCAGCAGCACTACACTGAAGAGCAAACAAACAGACAAGTTGATCAAAGACCAAAAAGTGGCGGTTGGATCCTTCAAAAACCTGATGTTTGGTGGTGCAGATAAATATTTGATTCTCCAAAACCAAAAGGCTTCCTATTATTCCGAGTCTGAGGTGGTTGGAGTTAAACCGTTGAAGGGCTTTGACAAAGCCAGCATCATCAAGGGTTCTCCTCGTCATGTTGAGGTGATGACAGGAACGAAACAGGATCATCAAAATAACAGTGGCACGGTGAAGGGAAGAAGCCCCAATAGCAATGATCCGGTTCAAAATCTAAATAATATGCACGAAAGAAGATCTCAAGTTAAACCTGCCATTCAGGTTGCAAAAGAAGGACACGCGATTACAAACAAGCACGTGCAGATGAGCAATGAAAAAAAGTCTAGGGATCATGTTGTAGTTCAAAAGTCAATACTCTCCAAAGGTGGAGGGAGTGAAATGACACCCAATTATTCATCAAAACAATCCATCAATAATGTTCAGAAGAAGAAGCATCAGTCATCCATAAACAAACCCACACCTTCCAAGAAATCAAGTGATGACCATGATCTAGCTGCATCCAATGAGAAAGTAAAAGAAATTACCAATAGGAAGAAGTCTTCCCCAAGATATCAAGAATTAGAACGAGCTAAAGGGAGGCAAACACTCAAGGATCATAAATTTGCAGCCAGCAAGAAAATAAAGCCTGAAAAGATGGAACAAATGTTAAGTAGAAGAAATGGACAAGAAGCTAGTGATAGAGCACCTGGCAAATTCAATGTCTTGAACGGAGCAGAGAGAAAAAGGTTTAGCATGTTCATAGAACATGAACTGCTTCCTCCTACTACTACCTTATACAATTCTGGCGGTGGCAGAGATTTCCGAGAACCAGCCAATGATTTGCAATACCAAGTTGTGAAACCGGCTGCACTCAATTTGCAAGATCGAGCTGTTCCTGAGGCGCCACATGAGGGATTCAAGACTAGTGAAGTTGCATGCCATAGAAGTAAAACAAATGGAGTCCGGGAAGATCAAAATATAAGCATCCAACAACCATTAACAGAAAGGGAAAATCACCTCAAGTGGATTTTGGTCATGAGTCAAATATTCGTCAATACTGCAGAAGCACTTTTCAGGCTAAACATTCCGTTTGGTATTCTTCAAGGTGGTGGTCAAGACAGTGAAGACCAAAGTAGAAAACTGATACTAGATTGCGGCTATGAAGTGATGAAAAGAAAGGGGATTCGGCAAGAGCTCAAAGTTCATACTTGTTCAAACATATCAACAATCACAAGTACTGTTAACATAGTAAGATCTTTAGATGACTTGGTTAGGAAGCTGAATGATGACATGGAGAAGCTTAAATTGCATGGAAGGAAAAAAGGTAGCCAAGTAGATGGTGAGGACTACCTGCCTAGTATGCTTGAACATGATGTCTATGATAAATGTCCAGACATAGACTGCATGTGGGATTTTGGTTGGAATGATGAAACATTTGCATTTATCGAAAAATATGATGTTATAAGGGACGCAGAAAAGCATATCCTAAGTGTGCTTCTGGATGAGATGGCCAAAGATTATTGCATGTTAAAGTGA 2607 0.4116 MAKRSDFAQKLLDDLRLRKERITATTSHSNNSNQSHHLPIDAYAYTKQTYRGSTNTRANEIVSSRCGEMGNRSSRGQRSLKSGGDLSNQIIPYEKAFQSNGGKPRRADLSFTNSILGFLHQIQRGTMDRGSNLDRQLAPTSRTLSLVQINEISKGAQKLNHILRACCSNGVNMDTYSLHFAKELLQGAIDLEESLGMLVDLQKNSEFMMTSQAQNKNRITLLEEEEEEDDNVEDQRWRMEKMQLARPTFSFDNKMQRAITISNSKEARKIKVSQQKRLSANTVGTADMSNQTVDKGRIPNVIAKLMGLDNLPEKKDSGNSNTASSKHSAKGSSSTTLKSKQTDKLIKDQKVAVGSFKNLMFGGADKYLILQNQKASYYSESEVVGVKPLKGFDKASIIKGSPRHVEVMTGTKQDHQNNSGTVKGRSPNSNDPVQNLNNMHERRSQVKPAIQVAKEGHAITNKHVQMSNEKKSRDHVVVQKSILSKGGGSEMTPNYSSKQSINNVQKKKHQSSINKPTPSKKSSDDHDLAASNEKVKEITNRKKSSPRYQELERAKGRQTLKDHKFAASKKIKPEKMEQMLSRRNGQEASDRAPGKFNVLNGAERKRFSMFIEHELLPPTTTLYNSGGGRDFREPANDLQYQVVKPAALNLQDRAVPEAPHEGFKTSEVACHRSKTNGVREDQNISIQQPLTERENHLKWILVMSQIFVNTAEALFRLNIPFGILQGGGQDSEDQSRKLILDCGYEVMKRKGIRQELKVHTCSNISTITSTVNIVRSLDDLVRKLNDDMEKLKLHGRKKGSQVDGEDYLPSMLEHDVYDKCPDIDCMWDFGWNDETFAFIEKYDVIRDAEKHILSVLLDEMAKDYCMLK 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04166 868 MobiDBLite consensus disorder prediction 485 518 - -
Vifa6g04166 868 MobiDBLite consensus disorder prediction 482 572 - -
Vifa6g04166 868 Coils Coil 222 242 - -
Vifa6g04166 868 MobiDBLite consensus disorder prediction 309 341 - -
Vifa6g04166 868 MobiDBLite consensus disorder prediction 411 436 - -
Vifa6g04166 868 Pfam DUF761-associated sequence motif 297 316 IPR032795 -
Vifa6g04166 868 MobiDBLite consensus disorder prediction 409 436 - -
Vifa6g04166 868 MobiDBLite consensus disorder prediction 314 340 - -
Vifa6g04166 868 Coils Coil 774 794 - -
Vifa6g04166 868 MobiDBLite consensus disorder prediction 66 86 - -
Vifa6g04166 868 PANTHER OS01G0228800 PROTEIN-RELATED 670 865 - -
Vifa6g04166 868 MobiDBLite consensus disorder prediction 519 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04166 Vifa-Chr6 1370420304 1370423516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04166 688 867 TRM (TON1 Recruiting Motif) Superfamily AT5G42710 42.391 4.44e-35 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04166 - - mtr:11406578 1308.51