Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04162 ATGAATGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAACACACCAAGATCTTGGAAGAACTTGTAAAGCTGCCTGAAAACAGGGAATGTGCTGATTGCAGGAACAAGGCTCCAAGATGGGCAAGTGTAAACCTAGGGATTTTTATTTGCATGCAATGTTCTGGGATTCACAGAAGCCTTGGAGTGCACATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAGTTTATGGGTAACGACAAGTCAAATAAGCATTGGGAGACAGATCTTCCTCCCAATTTCGACACAAGTAGATTGGAAATTGACAAGTTTATCCGTGCCAAGTATGTGGAGAAAAGATGGGTTTCGAAAGATAAACCAGAATCAACTTCAAAGTTAGCTGAAAATATCGTCAACTTTAATCAGTTGCCATATGGTGGGACTAGGAGTGGTTTTCCGAACAGTAGGAGACTTTCTCTTGAAGAAAGCATTCTTGTAAACCACTTGGCACAAGTTCTGCCGCCTGTAACAAGATCCCGTGAGATTAAGGGTTGTCAGGACAAGCAAAAGAAGAGTTCACCTCCATTAAAGAGACCATCATCATCCGTTGATTTTGACAAGTCCCCAGGAAAGAGTGCTGAATTTTTCAATTTGCTTTGCATCCATGACAATAAGCAGACCTTCTCCGCCGTACCTCCTTCAAGCTGGGCCACATTTGATTGTATGACAAATAATATACTTTTGCCTCTAATCTTTCATACCATTTCTATAAATTCAATGGCTAAAGCAAACTAA 804 0.4142 MNGKASISKELNAKHTKILEELVKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNDKSNKHWETDLPPNFDTSRLEIDKFIRAKYVEKRWVSKDKPESTSKLAENIVNFNQLPYGGTRSGFPNSRRLSLEESILVNHLAQVLPPVTRSREIKGCQDKQKKSSPPLKRPSSSVDFDKSPGKSAEFFNLLCIHDNKQTFSAVPPSSWATFDCMTNNILLPLIFHTISINSMAKAN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04162 267 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vifa6g04162 267 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vifa6g04162 267 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vifa6g04162 267 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Vifa6g04162 267 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Vifa6g04162 267 CDD ArfGap 19 119 - -
Vifa6g04162 267 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vifa6g04162 267 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 244 IPR044520 GO:0005096
Vifa6g04162 267 MobiDBLite consensus disorder prediction 184 211 - -
Vifa6g04162 267 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Vifa6g04162 267 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Vifa6g04162 267 SMART arf_gap_3 16 132 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04162 Vifa-Chr6 1369505270 1369506944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04162 19 125 C2H2 Transcription Factor Family AT3G07940 45.133 3.92e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04162 K12486 - gmx:100803735 377.096