Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04161 ATGAGGTGGTGCAGCGAGGGTATGACATTGTCACTCGCCCCTCCTCCTCACATTGTTACGACTACGAGGTGGTGCGGCAATAATAAAAATAAAAGCTGGGAGTTTGAATTTCAAAAGGCTTTCTTAAAATTAAAATTCAACAAGTCGGCTCTTGTTATTCATCGGAACTCGGCGTGGGCTACTCAAGTAGAAGAAGCGTGGTCAAGTTCAAGGGATTTTGTTGTCGTTAATTTCTACCATTTTGTGTTGATCAAAAACCCACAAGAACTAGTCGCCAAACACCTCTCTTTCTTGGAATTGGAGGGTCTAGACATCAATGGAAGAATTTATTTGAATCAACAAGGGATTAATGCGCAGTATAGTGGGCCATCAAAAGACGCTATCACTTATGTCAACTGGATAAAACAGGATACCAGGTTTTCTGACATCCTCCTTCAGATTTCTCCATCGGAAGCTGGTCATACCTTTCCATCATTGAAGTTGCGCTATAAGCCTTCCTTAGTACAGTTTAAACATGGCATATCAGATCTTCCATTGCTCGATCCTTCAATGCGGGCCCTACCTTTATCACCTTCACAATGGAGACATAGATTACAAGCCATCAATCAAAATCCCAACACAAATAACATTATATTGGATGTCAGAAATGGTTATGAGTGGGACATTGGACATTTTCGTGGGGCTCAACGACCTAACGTGGACTGTTTTAGGAGCACTTCGTTTGGACTGTCTCAAGAAGAGATCACTGCTTCAGATCCTTTGTCAAATGTAGATAAAGAAAATGCAAACATATTGATGTATTGCACAGGAGGGATTCGGTGTGATGTGTATTCTACAATACTGAGGCAGCATGGATTTCAGAATTTGTATACTCTGAAGGGAGGTGTTTCTCACTATATAAAGAATGAAGGTGCTGCAGAATGGGCCATTCCTGAAGGTGGGATGACTCCAGTTTCTAGAGATGATAAGTTTGCCAAATGCTACATATGTAATGTAGAAGTCAGTGAACTGAGACATCGGAATTGTGCAAACCTTGACTGTAACTTGCTTTTTCTATGCTGCAGAAAATGTGTAAATGATCTAAAAGGATGTTGTTGTTTGACTTGTACTACTGCCCCTAGGCTTAGACCTGCTTTAATTGGAGAGCAGAGATACAGGAAATGGCACATTTATCGTGACATGGATTTGCAAGGCAAGGGGAATTGA 1206 0.4113 MRWCSEGMTLSLAPPPHIVTTTRWCGNNKNKSWEFEFQKAFLKLKFNKSALVIHRNSAWATQVEEAWSSSRDFVVVNFYHFVLIKNPQELVAKHLSFLELEGLDINGRIYLNQQGINAQYSGPSKDAITYVNWIKQDTRFSDILLQISPSEAGHTFPSLKLRYKPSLVQFKHGISDLPLLDPSMRALPLSPSQWRHRLQAINQNPNTNNIILDVRNGYEWDIGHFRGAQRPNVDCFRSTSFGLSQEEITASDPLSNVDKENANILMYCTGGIRCDVYSTILRQHGFQNLYTLKGGVSHYIKNEGAAEWAIPEGGMTPVSRDDKFAKCYICNVEVSELRHRNCANLDCNLLFLCCRKCVNDLKGCCCLTCTTAPRLRPALIGEQRYRKWHIYRDMDLQGKGN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04161 401 CDD RHOD_YceA 189 301 - -
Vifa6g04161 401 Gene3D - 60 168 - -
Vifa6g04161 401 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 68 392 IPR020936 -
Vifa6g04161 401 Pfam Rhodanese-like domain 203 300 IPR001763 -
Vifa6g04161 401 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 189 302 IPR036873 -
Vifa6g04161 401 Pfam UPF0176 acylphosphatase like domain 74 165 IPR040503 -
Vifa6g04161 401 Pfam Rhodanase C-terminal 319 370 IPR022111 -
Vifa6g04161 401 Gene3D - 182 316 IPR036873 -
Vifa6g04161 401 SMART rhod_4 190 305 IPR001763 -
Vifa6g04161 401 ProSiteProfiles Rhodanese domain profile. 210 308 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04161 Vifa-Chr6 1369278560 1369283250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04161 72 397 Sulfurtransferasese or Rhodanese AT1G17850 60.440 6.94e-158 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04161 - - mtr:25488455 595.89