Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04153 ATGGCGATTCAAAACGAACCGGCGAAGCTCAGGTGGGGAGAATTGGAAGAAGACGACGGCGAAGATCTCGATTTTCTGTTACCTCCACGCCAGATCATAGGTCCTGACGAAAACGGAATCAAGAAGGTTATCGAGTACCAGTTTGACGATGATGGTAATAAGGTTAAGATCACAACAACCACTCGCACCCGCAAACTCGCCAACGCGCGTCTCAGCAAACGCGCTGTTGAACGCCGTTCGTGGCCGAAGTTTGGAGATGCTGTTCAGGAAGATGTTGGTGCTCGCCTCACTATGGTCTCTACTGAAGAAATCGTTCTCGAACGCCCCAAACCTCTTGGTTCCAGCAAGGAGGATGCGAATATTGATCCATTGGCTTCTTTCAACAAAGGTGCTGTTCTTATGGTGTGCAGGACTTGTGGGAAGAAGGGAGACCATTGGACTTCAAGATGTCCATATAAGGATCTCGCACAGCCATCTGAGGGCTTTGTTGATAAACCTCCAACTGCAGATGGTGCTGCGGCTCCTGCTGGTTCGACTAAGGGTACATATGTACCTCCTAGCCTGAGAGAAGGTGCTTCAAGGACACAAGGGTCAGACATGAGGCGGAGGAACGATGAGAATTCTGTTCGGGTAACCAACCTCTCGGAGGACACAAGGGAGCCTGATTTGATGGAGCTTTTCAGGCCTTTTGGTGCTGTGAGCAGGGTCTATGTTGCTATAGATCAAAAGACTGGCATGAGTAGAGGCTTTGGCTTTGTTAACTTTGTCAGCAGGGAAGATGCTCAGCGGGCTATCAACAAACTCAATGGATATGGCTACGATAATCTCATTCTGAGAGTTGAATGGGCCACCCCTAGAACAACCTAA 867 0.4925 MAIQNEPAKLRWGELEEDDGEDLDFLLPPRQIIGPDENGIKKVIEYQFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPKPLGSSKEDANIDPLASFNKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPSEGFVDKPPTADGAAAPAGSTKGTYVPPSLREGASRTQGSDMRRRNDENSVRVTNLSEDTREPDLMELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04153 288 Pfam Eukaryotic translation initiation factor 3 subunit G 32 155 IPR024675 -
Vifa6g04153 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vifa6g04153 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vifa6g04153 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Vifa6g04153 288 Gene3D - 169 288 IPR012677 -
Vifa6g04153 288 MobiDBLite consensus disorder prediction 161 209 - -
Vifa6g04153 288 SUPERFAMILY RNA-binding domain, RBD 195 287 IPR035979 GO:0003676
Vifa6g04153 288 FunFam Eukaryotic translation initiation factor 3 subunit G 171 288 - -
Vifa6g04153 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 284 - -
Vifa6g04153 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Vifa6g04153 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
Vifa6g04153 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Vifa6g04153 288 MobiDBLite consensus disorder prediction 195 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04153 Vifa-Chr6 1365422066 1365423584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04153 4 288 Eukaryotic Initiation Factors Gene Family AT3G11400 66.352 3.21e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04153 K03248 - gmx:100818725 499.204