Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04146 ATGTGGATGGTAGGTTACAATGAAGGTAATGACTTCAACATGCCTGATTATCCTTTCAATGGAAGAAAACTCAGACCTCTCATTCCAAAACCACTCACTACTACTAACTCTTCTTCTTCTTCTCCTAACAACAACGTTTCTACCAATAATACTCGCATTCATGCCACCAATGATTTCTTCTCACAATATCACAACCTTCACCAAGTTGGAGATCAAAGCAAGAGATCGGAGTTGAACAATCCGGCTGCGGTTGTGGTGAGTTCGAGATGGAATCCAACGCCGGAACAGCTAAGAGCACTTGAAGAATTATATAGAAGAGGAACAAGAACACCGTCGGCCGAACAAATCCAACAAATCACTGCACAGCTAAGAAGATTTGGAAAAATTGAAGGAAAGAATGTCTTCTATTGGTTTCAGAATCACAAAGCAAGAGAAAGACAGAAACGACGCCGTCAAATGGAATCAGCTGCTGAGTTTGATGCTTCTCTTGAAAAGAAAGACCTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACACACCAAAAACTGGCTACCATCCACAAACTCCAGTACCAGTACTCTTCCTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGTAGCAGCAAAAGCAGATCAGTACTCTAGAGCAGATGGATGGGTCCAATTCGATGAAGCAGAAAGAAAAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTAACTTGTCCTACCTTCATAAACACTACACAATACCCTAATAATTCTAATTACATCTCTTCTACAGCCACAGCTAGCATGGCCACCACCACTTCAACCACAGTAACAACTAGACTAATGGACCCAAAACTCATCAACAGGACACATGATTTAAGCTTATTCATTTCACCTTTCCACTTAACCACTAGTAGTAGTAGTAGTAGAGTCAACAATAGTACTCACACTCAGCATGAAGAATCTGATCAAACACTTCAACTTTTCCCAATAAGGAATGAAGGAGATAATGGATGTAGTGATGATGTTGATCATAGCGTTATTAACCAACACAAAGAGACAGAGATATCATCTTCAGCAATGAATGCACCAAACCAGTTTATCGAGTTTCTACCATTGAAGAACTGA 1125 0.4044 MWMVGYNEGNDFNMPDYPFNGRKLRPLIPKPLTTTNSSSSSPNNNVSTNNTRIHATNDFFSQYHNLHQVGDQSKRSELNNPAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEFDASLEKKDLGASRTVFEVEHTKNWLPSTNSSTSTLPLAEESVSIQRVAAKADQYSRADGWVQFDEAERKNFMERNATWHMMQLTCPTFINTTQYPNNSNYISSTATASMATTTSTTVTTRLMDPKLINRTHDLSLFISPFHLTTSSSSSRVNNSTHTQHEESDQTLQLFPIRNEGDNGCSDDVDHSVINQHKETEISSSAMNAPNQFIEFLPLKN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04146 374 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677
Vifa6g04146 374 Pfam Homeodomain 88 147 IPR001356 GO:0003677
Vifa6g04146 374 SUPERFAMILY Homeodomain-like 88 154 IPR009057 -
Vifa6g04146 374 CDD homeodomain 89 149 IPR001356 GO:0003677
Vifa6g04146 374 Gene3D - 86 148 - -
Vifa6g04146 374 MobiDBLite consensus disorder prediction 303 325 - -
Vifa6g04146 374 SMART HOX_1 85 152 IPR001356 GO:0003677
Vifa6g04146 374 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 71 368 IPR044555 GO:0003700|GO:0099402
Vifa6g04146 374 FunFam WUSCHEL-related homeobox 4 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04146 Vifa-Chr6 1364078947 1364081021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04146 1 374 Wox Gene Family AT3G18010 38.084 9.36e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa6g04146 Homeodomain 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04146 - - psat:127106827 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g04146 6 1364078947 1364081021 Vifa6g04146 6 1364078947 1364081021 ECH