Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g04133 ATGAAGAACATTCTTAAGAAGCTTCATATAATGTCTAATAATCAATCAGAAGAAGCACAAGGCGAAAGGAGTAACAACAAGGTCAATGATGGTTCATCTTCGTCTCCTACTAGGCGAAAGAAGCTTTCGAATTGGTTGCAGTCAGTTGCTTCTACTAATAGGCAGAGTCCATGTAGTCCTCCATCTCCAAATTTGTCAAGAGGGGAGAGAGTGGAGCTATCTGATTCAGTGAGTTTTGGTGGTGGTTTGGATATGGTTGGTGAATCCACGAAACGTGATTCGGAGTCTAGTAGTTCAAGGGATCCGGAAGTGGAGGAAGAATATCAGATTCAACTTGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTCGCCTACCGATACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGACGGTTTCTATGATCTGTACGGTGTCTTAACCGAGTCAACCTCGACAAGAATGCCTTCTCTTATAGATCTGCAAGGAACACCAACCGCAAATGATGTAAAATGGGAAGCAGTCTTGGTCAATAGGGTTGCCGATTCCAATTTGTTGAAACTTGAACAAAAGTCCATGGAGCTTGCAGTGAAGTCAAGAGAAGATTTTGAAATAGTTGTAGATAGAAACTTGGTGCACAAGCTTGCAATACTAGTTGCTGAATATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTTAAGAGCATGGAGGAGCCTTAGTTTCAGTCTAAAAGCAACCCTTGGTAGCATGGTTTTGCCTCTTGGTTCGCTGACCATGGGATTGGCTCGGCATCGCGCATTGCTATTTAAGGTATTAGCCGATAGTCTGGGCATCCCTTGCCGGTTGGTGAAAGGAATGCAATATACAGGTTCCGATGATGTGGCAATGAACTTTGTCAAGATTGACGAAGGAAGGGAGTACATTGTTGACCTCATGGCAGCTCCTGGAACTCTTATTCCATCTGATGCAGCTGGTTCACATATTGAGTACGATGATTCTTCTTTCGTTGCTAGTCCTTCATCAAGAGACCATGATTCGTCTCGCATTGCATCGTTCAGCAGCGGGGTTGGAAGTTCATCCGGAGAAACTTCAGAGTTTGGGACTTTTGAAAAAGGAAACAGGTACAAGCATTTTGCCTATGCAGGGAAGGAATCTGATCCTGGCAAGGAAGAAGTAAAGAAACCGTTAAATGAATTCAAAAATATGCCAAATGTAGAAAAGATCAAGGCGAGGGAATCTGTTAGCAGACCTAATAATTATCCGTACACGCACGGAAGATCTCCTTCTTGGACAGAAGGGATAAGTTCCCCTGCAGCACATAGAATGAAAGTCAAAGATGTTTCTCAATATATGATCGACGCTGCAAAAGAGAACCCTAACTTGGCTCAAAAGCTTCATGATGTCTTACTTGAAAGCGGCGTTGTTGCTCCTCCAAACTTGTTTTCTGAAATTTATCATGACCAGATGAGTTCTCAAAATGAGGCCAATCCAAATGAGGACAATTCTACAACCGAAGAAAAAGATGAAGAATATAAACATGGAAGTGCGCAGAAAGAAGCCAAGGTTGGCGATAATCTAGCTCCTCCTCGATTTTTGCCTCCATTGCCTCCTCACAGAACTCATCCCAAAGCAAGTCCTAGCAATCTGACGGAGCATTCTAAGCCTGTAGAAGGTTTGGGAATCGGCCTTTCTCTTGATACAAGGGAAGGTGCTGGACAGCAGATACAATCCGATACAGAAGCAGCACAAGTAAAGTATGGGAAAAATGTCCCGGTTGCTGCTGCTGCAGCGGCTGCGGCTGCTGTTGTCGCTTCTTCTATGGTAGCTGCCGTGGCAAAGTCAAGCACTGACTCAAATTTTGAGATTCCTGTAGCGGCAGCTGCTACGGCTACTGCCGCAGCTGTTGTAGCAACCACTGCTGCTGTCAATAATGTCAATAAACAGTATGAGCAGGGGAATCGAAGTGATGGAGAGACAGGTAGTGGTGATGGAGAGAATAATGCTTTAGGAGCAAACTCTGAAGGCGAGCGAAAATCTGATAGATCAGTAAGTAATGATAGCACAAAATCTGATTCTGCACTAGAAGATGTTGCCGAGTATGATATTCCATGGGAGGAAATCTCAATGGGTGAACGTATCGGACTTGGATCGTATGGAGAAGTATATCGTGGCGAATGGCATGGAACTGAAGTTGCTGTAAAGAGGTTTCTACTTCAAGATATCTCTGGGGAATCACTTGAAGAATTCAAAAGTGAGGTCCAAATAATGAGAAGACTGAGGCATCCTAATGTTGTTCTCTTCATGGGAGCTATAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCGAGAGGGAGTTTGTATAGATTACTTCACCGACCTAACAGTCAATTAGACGAGCGAAGACGATTGAGGATGGCCCTGGACGCGGCTCGAGGAATGAACTATTTGCACAACAGCACACCAGTGATAGTGCATCGGGACTTGAAGTCCCCAAACCTTCTTGTCGACAAAAACTGGGTTGTAAAGGTATGCGATTTCGGCTTATCCCGAATGAAGTACAGTACATTCCTTTCTTCAAGATCAACGGCGGGAACAGCCGAGTGGATGGCTCCGGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGTGTGATGTTTTTAGCTACGGGGTCATATTATGGGAGCTCTCTACTTTGCGGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTCGGTTTCCAGCATCGTCGTCTTGACATTCCAGACAACGTGGACCCTGCCGTTGCAAATATTATTCGACAGTGTTGGCAGACAGATCCAAAATTGAGACCTACTTTTGCTGAAATCATGGCGTTGCTGAAGCCGTTGCAAAAGCCAATTACTGCTTCTCAAGTGCATAGAGCAAATGCTCAGACACCATCATCGCGAGTTCCTGAAGCATAA 3048 0.4436 MKNILKKLHIMSNNQSEEAQGERSNNKVNDGSSSSPTRRKKLSNWLQSVASTNRQSPCSPPSPNLSRGERVELSDSVSFGGGLDMVGESTKRDSESSSSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGVLTESTSTRMPSLIDLQGTPTANDVKWEAVLVNRVADSNLLKLEQKSMELAVKSREDFEIVVDRNLVHKLAILVAEYMGGSVEDPESMLRAWRSLSFSLKATLGSMVLPLGSLTMGLARHRALLFKVLADSLGIPCRLVKGMQYTGSDDVAMNFVKIDEGREYIVDLMAAPGTLIPSDAAGSHIEYDDSSFVASPSSRDHDSSRIASFSSGVGSSSGETSEFGTFEKGNRYKHFAYAGKESDPGKEEVKKPLNEFKNMPNVEKIKARESVSRPNNYPYTHGRSPSWTEGISSPAAHRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEIYHDQMSSQNEANPNEDNSTTEEKDEEYKHGSAQKEAKVGDNLAPPRFLPPLPPHRTHPKASPSNLTEHSKPVEGLGIGLSLDTREGAGQQIQSDTEAAQVKYGKNVPVAAAAAAAAAVVASSMVAAVAKSSTDSNFEIPVAAAATATAAAVVATTAAVNNVNKQYEQGNRSDGETGSGDGENNALGANSEGERKSDRSVSNDSTKSDSALEDVAEYDIPWEEISMGERIGLGSYGEVYRGEWHGTEVAVKRFLLQDISGESLEEFKSEVQIMRRLRHPNVVLFMGAITRPPNLSIVTEFLPRGSLYRLLHRPNSQLDERRRLRMALDAARGMNYLHNSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKYSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELSTLRQPWGGMNPMQVVGAVGFQHRRLDIPDNVDPAVANIIRQCWQTDPKLRPTFAEIMALLKPLQKPITASQVHRANAQTPSSRVPEA 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g04133 1015 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 177 997 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 364 395 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 519 586 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 529 548 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 677 723 - -
Vifa6g04133 1015 PRINTS Tyrosine kinase catalytic domain signature 896 906 IPR001245 GO:0004672|GO:0006468
Vifa6g04133 1015 PRINTS Tyrosine kinase catalytic domain signature 849 867 IPR001245 GO:0004672|GO:0006468
Vifa6g04133 1015 PRINTS Tyrosine kinase catalytic domain signature 915 937 IPR001245 GO:0004672|GO:0006468
Vifa6g04133 1015 PRINTS Tyrosine kinase catalytic domain signature 959 981 IPR001245 GO:0004672|GO:0006468
Vifa6g04133 1015 PRINTS Tyrosine kinase catalytic domain signature 810 823 IPR001245 GO:0004672|GO:0006468
Vifa6g04133 1015 Gene3D Transferase(Phosphotransferase) domain 1 815 1001 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 444 463 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 88 105 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 445 463 - -
Vifa6g04133 1015 ProSitePatterns Protein kinases ATP-binding region signature. 742 763 IPR017441 GO:0005524
Vifa6g04133 1015 Pfam Protein tyrosine and serine/threonine kinase 737 987 IPR001245 GO:0004672|GO:0006468
Vifa6g04133 1015 Pfam Ethylene-responsive protein kinase Le-CTR1 145 348 - -
Vifa6g04133 1015 SMART serkin_6 736 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04133 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 855 867 IPR008271 GO:0004672|GO:0006468
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 8 63 - -
Vifa6g04133 1015 SUPERFAMILY Protein kinase-like (PK-like) 719 987 IPR011009 -
Vifa6g04133 1015 FunFam Serine/threonine-protein kinase CTR1 815 998 - -
Vifa6g04133 1015 FunFam Serine/threonine-protein kinase isoform 1 727 814 - -
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 1 105 - -
Vifa6g04133 1015 CDD STKc_MAP3K-like 742 988 - -
Vifa6g04133 1015 Gene3D Phosphorylase Kinase; domain 1 729 813 - -
Vifa6g04133 1015 ProSiteProfiles Protein kinase domain profile. 736 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g04133 1015 MobiDBLite consensus disorder prediction 677 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g04133 Vifa-Chr6 1361670323 1361675160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g04133 1 1002 MAP Kinase Kinase Kinase AT1G73660 61.089 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa6g04133 PK_Tyr_Ser-Thr 4.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g04133 - - gmx:100778331 1510.35